Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   OZ430_RS14240 Genome accession   NZ_CP115039
Coordinates   3075513..3076556 (-) Length   347 a.a.
NCBI ID   WP_375664618.1    Uniprot ID   -
Organism   Stutzerimonas kunmingensis strain LP1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3070513..3081556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZ430_RS14225 (OZ430_14230) - 3072312..3073721 (+) 1410 WP_179484520.1 MBL fold metallo-hydrolase RNA specificity domain-containing protein -
  OZ430_RS14230 (OZ430_14235) - 3073837..3074928 (+) 1092 WP_023444835.1 LOG family protein -
  OZ430_RS14235 (OZ430_14240) recX 3075040..3075507 (-) 468 WP_312917789.1 recombination regulator RecX -
  OZ430_RS14240 (OZ430_14245) recA 3075513..3076556 (-) 1044 WP_375664618.1 recombinase RecA Machinery gene
  OZ430_RS14245 (OZ430_14250) - 3076640..3077137 (-) 498 WP_014819876.1 CinA family protein -
  OZ430_RS14250 (OZ430_14255) - 3077235..3078347 (-) 1113 WP_041013535.1 acyltransferase -
  OZ430_RS14255 (OZ430_14260) mutS 3078818..3081397 (+) 2580 WP_312915706.1 DNA mismatch repair protein MutS -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37023.38 Da        Isoelectric Point: 5.3078

>NTDB_id=768009 OZ430_RS14240 WP_375664618.1 3075513..3076556(-) (recA) [Stutzerimonas kunmingensis strain LP1]
MDENKKRALAAALGQIEKQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
EAQKMGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
THVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYRNGEVIDLGVQQGLVEKSGAWYAYKGNKIGQGKANAAKYLEDNPEIGQEIEQ
QIRDKLLVVSGGSKANVVSEDLADADL

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=768009 OZ430_RS14240 WP_375664618.1 3075513..3076556(-) (recA) [Stutzerimonas kunmingensis strain LP1]
ATGGACGAGAACAAGAAGCGCGCCTTGGCTGCAGCCCTGGGCCAGATCGAAAAGCAGTTCGGCAAGGGCGCAGTGATGCG
CATGGGCGATCATGATCGTCAGGCCATTCCGGCCATCTCTACCGGCTCGCTGGGCCTGGACATCGCGCTTGGCATCGGCG
GCCTGCCCAAGGGCCGTATCGTCGAAATCTACGGTCCGGAATCCTCCGGTAAGACCACCCTGACCCTGTCGGTGATCGCC
GAAGCGCAGAAGATGGGCGCCACCTGTGCCTTCGTCGACGCCGAACACGCGCTGGACCCGGACTATGCCGGCAAGTTGGG
CGTGAATGTCGACGACCTGCTGGTTTCGCAGCCGGACACCGGCGAGCAGGCGCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCGGTTGACGTGATCATCGTCGACTCCGTGGCGGCACTGGTACCCAAGGCCGAGATCGAAGGCGAGATGGGCGAC
ACGCACGTCGGCCTGCAGGCACGTCTGATGTCCCAGGCGCTGCGCAAGATCACCGGCAACATTAAGAACGCCAATTGCCT
GGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCCTCGGTTCGTCTGGACATTCGCCGTACCGGCGCGGTCAAGGAAGGCGACGAAGTGGTCGGCAGCGAA
ACCCGCGTCAAGGTAGTGAAGAACAAGGTGGCGCCGCCCTTCCGTCAGGCTGAGTTCCAGATCCTCTATGGCAAGGGCAT
CTACCGCAATGGCGAGGTCATCGATCTCGGCGTGCAGCAGGGCCTGGTGGAGAAGTCCGGCGCCTGGTACGCCTACAAGG
GCAACAAGATCGGCCAGGGCAAGGCCAACGCCGCCAAGTATCTGGAAGACAATCCGGAGATCGGTCAGGAGATCGAGCAA
CAGATCCGCGACAAGCTGCTCGTGGTTTCTGGCGGTAGCAAGGCTAACGTAGTCAGCGAAGATCTGGCTGACGCCGATCT
CTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

95.101

100

0.951
  recA Acinetobacter baumannii D1279779

74.063

100

0.741
  recA Acinetobacter baylyi ADP1

77.134

94.524

0.729
  recA Vibrio cholerae strain A1552

74.924

94.236

0.706
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.924

94.236

0.706
  recA Glaesserella parasuis strain SC1401

73.765

93.372

0.689
  recA Ralstonia pseudosolanacearum GMI1000

71.951

94.524

0.68
  recA Neisseria gonorrhoeae MS11

71.605

93.372

0.669
  recA Neisseria gonorrhoeae MS11

71.605

93.372

0.669
  recA Neisseria gonorrhoeae strain FA1090

71.605

93.372

0.669
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.832

94.236

0.611
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.677

96.254

0.594
  recA Helicobacter pylori strain NCTC11637

62.691

94.236

0.591
  recA Helicobacter pylori 26695

62.08

94.236

0.585
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

92.507

0.576
  recA Streptococcus mitis NCTC 12261

57.225

99.712

0.571
  recA Streptococcus mitis SK321

56.936

99.712

0.568
  recA Streptococcus pneumoniae R6

58.912

95.389

0.562
  recA Streptococcus pneumoniae D39

58.912

95.389

0.562
  recA Streptococcus pneumoniae TIGR4

58.912

95.389

0.562
  recA Streptococcus pneumoniae Rx1

58.912

95.389

0.562
  recA Streptococcus mutans UA159

59.692

93.66

0.559
  recA Streptococcus pyogenes NZ131

58.537

94.524

0.553
  recA Latilactobacillus sakei subsp. sakei 23K

59.813

92.507

0.553
  recA Lactococcus lactis subsp. cremoris KW2

57.585

93.084

0.536
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.135

93.948

0.527