Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ICA20_RS05545 Genome accession   NZ_CP115032
Coordinates   1135504..1136568 (+) Length   354 a.a.
NCBI ID   WP_038633038.1    Uniprot ID   -
Organism   Citrobacter sp. C5_2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1130504..1141568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICA20_RS05515 (ICA20_005515) srlD 1130671..1131450 (-) 780 WP_006687183.1 sorbitol-6-phosphate dehydrogenase -
  ICA20_RS05520 (ICA20_005520) srlB 1131468..1131830 (-) 363 WP_038633050.1 PTS glucitol/sorbitol transporter subunit IIA -
  ICA20_RS05525 (ICA20_005525) - 1131844..1132815 (-) 972 WP_038633048.1 PTS glucitol/sorbitol transporter subunit IIB -
  ICA20_RS05530 (ICA20_005530) srlA 1132812..1133375 (-) 564 WP_003825953.1 PTS glucitol/sorbitol transporter subunit IIC -
  ICA20_RS05535 (ICA20_005535) mltB 1133641..1134720 (+) 1080 WP_038633043.1 lytic murein transglycosylase B -
  ICA20_RS05540 (ICA20_005540) pncC 1134914..1135411 (+) 498 WP_003037333.1 nicotinamide-nucleotide amidase -
  ICA20_RS05545 (ICA20_005545) recA 1135504..1136568 (+) 1065 WP_038633038.1 recombinase RecA Machinery gene
  ICA20_RS05550 (ICA20_005550) recX 1136641..1137141 (+) 501 WP_038633035.1 recombination regulator RecX -
  ICA20_RS05555 (ICA20_005555) alaS 1137269..1139896 (+) 2628 WP_038633032.1 alanine--tRNA ligase -
  ICA20_RS05560 (ICA20_005560) csrA 1140135..1140320 (+) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38088.38 Da        Isoelectric Point: 4.6925

>NTDB_id=767954 ICA20_RS05545 WP_038633038.1 1135504..1136568(+) (recA) [Citrobacter sp. C5_2]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGKANATNWLKENPATAKEI
EKKLRELLLNNQDSTPDFSVDDGGEDVAETNEDF

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=767954 ICA20_RS05545 WP_038633038.1 1135504..1136568(+) (recA) [Citrobacter sp. C5_2]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCGCTGGGTCAGATCGAAAAGCAATTCGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTTCCATGGATGTGGAAACCATCTCCACCGGTTCGCTTTCTCTGGACATCGCATTGGGCG
CGGGCGGTTTGCCAATGGGCCGTATCGTCGAAATCTACGGGCCTGAATCTTCCGGTAAAACGACGCTGACGCTGCAGGTT
ATTGCCGCCGCTCAGCGCGAAGGTAAAACCTGTGCGTTTATTGATGCGGAACACGCGCTGGATCCCGTCTATGCCCGTAA
GCTTGGCGTTGATATCGACAACCTGCTGTGTTCCCAGCCGGATACCGGCGAACAAGCGCTGGAAATCTGTGATGCGCTGG
CGCGTTCCGGTGCGGTTGACGTTATCGTTGTCGACTCCGTGGCGGCGCTGACGCCGAAAGCGGAAATCGAAGGCGAGATT
GGCGACTCTCACATGGGTCTTGCGGCGCGTATGATGAGCCAGGCGATGCGTAAGCTGGCCGGTAACCTGAAGCAGTCCAA
CACGCTGCTGATTTTCATCAACCAGATCCGTATGAAAATTGGCGTTATGTTCGGTAACCCGGAAACCACTACCGGTGGTA
ACGCGCTGAAATTCTATGCCTCCGTGCGCCTGGACATTCGCCGTATTGGCGCAGTGAAAGAGGGCGACAACGTGGTCGGT
AGCGAAACCCGCGTTAAGGTCGTGAAAAACAAAATCGCCGCGCCGTTTAAACAGGCTGAATTCCAGATTCTGTACGGTGA
AGGTATCAACTTCTATGGCGAACTGGTTGATCTGGGCGTGAAAGAGAAGCTGATTGAAAAAGCCGGTGCATGGTACAGCT
ATAACGGTGAGAAAATCGGTCAGGGTAAAGCGAATGCGACCAACTGGCTGAAAGAAAACCCGGCAACCGCAAAAGAAATT
GAGAAGAAATTGCGCGAGCTACTGCTCAATAACCAGGATTCAACGCCAGATTTCTCCGTTGATGACGGTGGCGAAGACGT
AGCAGAAACGAACGAAGATTTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

84.894

93.503

0.794
  recA Vibrio cholerae strain A1552

84.894

93.503

0.794
  recA Pseudomonas stutzeri DSM 10701

74.184

95.198

0.706
  recA Acinetobacter baumannii D1279779

74.924

92.373

0.692
  recA Acinetobacter baylyi ADP1

74.618

92.373

0.689
  recA Glaesserella parasuis strain SC1401

68.946

99.153

0.684
  recA Neisseria gonorrhoeae MS11

69.325

92.09

0.638
  recA Neisseria gonorrhoeae MS11

69.325

92.09

0.638
  recA Neisseria gonorrhoeae strain FA1090

69.325

92.09

0.638
  recA Ralstonia pseudosolanacearum GMI1000

71.061

87.853

0.624
  recA Streptococcus mitis SK321

59.544

99.153

0.59
  recA Streptococcus mitis NCTC 12261

59.544

99.153

0.59
  recA Helicobacter pylori strain NCTC11637

61.424

95.198

0.585
  recA Helicobacter pylori 26695

61.128

95.198

0.582
  recA Lactococcus lactis subsp. cremoris KW2

62.848

91.243

0.573
  recA Streptococcus pneumoniae TIGR4

62.539

91.243

0.571
  recA Streptococcus pneumoniae Rx1

62.539

91.243

0.571
  recA Streptococcus pneumoniae D39

62.539

91.243

0.571
  recA Streptococcus pneumoniae R6

62.539

91.243

0.571
  recA Streptococcus pyogenes NZ131

62.154

91.808

0.571
  recA Bacillus subtilis subsp. subtilis str. 168

62.928

90.678

0.571
  recA Streptococcus mutans UA159

61.846

91.808

0.568
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.728

91.525

0.565
  recA Latilactobacillus sakei subsp. sakei 23K

61.231

91.808

0.562
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.639

93.785

0.559
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.748

90.678

0.551