Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   IB196_RS05030 Genome accession   NZ_CP115031
Coordinates   1025501..1026565 (+) Length   354 a.a.
NCBI ID   WP_005130545.1    Uniprot ID   A0A6N6JYE5
Organism   Citrobacter sp. C6_1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1020501..1031565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IB196_RS05000 (IB196_005005) srlD 1020667..1021446 (-) 780 WP_005130555.1 sorbitol-6-phosphate dehydrogenase -
  IB196_RS05005 (IB196_005010) srlB 1021464..1021826 (-) 363 WP_005130554.1 PTS glucitol/sorbitol transporter subunit IIA -
  IB196_RS05010 (IB196_005015) - 1021840..1022811 (-) 972 WP_188232183.1 PTS glucitol/sorbitol transporter subunit IIB -
  IB196_RS05015 (IB196_005020) srlA 1022808..1023371 (-) 564 WP_003037339.1 PTS glucitol/sorbitol transporter subunit IIC -
  IB196_RS05020 (IB196_005025) mltB 1023637..1024716 (+) 1080 WP_005130548.1 lytic murein transglycosylase B -
  IB196_RS05025 (IB196_005030) pncC 1024911..1025408 (+) 498 WP_005130547.1 nicotinamide-nucleotide amidase -
  IB196_RS05030 (IB196_005035) recA 1025501..1026565 (+) 1065 WP_005130545.1 recombinase RecA Machinery gene
  IB196_RS05035 (IB196_005040) recX 1026635..1027135 (+) 501 WP_188232184.1 recombination regulator RecX -
  IB196_RS05040 (IB196_005045) alaS 1027264..1029891 (+) 2628 WP_005130541.1 alanine--tRNA ligase -
  IB196_RS05045 (IB196_005050) csrA 1030130..1030315 (+) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38088.38 Da        Isoelectric Point: 4.6925

>NTDB_id=767930 IB196_RS05030 WP_005130545.1 1025501..1026565(+) (recA) [Citrobacter sp. C6_1]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGKANATNWLKENPAAAKEI
EKKLRELLLNNQDSTPDFSVDDSGEDVAETNEDF

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=767930 IB196_RS05030 WP_005130545.1 1025501..1026565(+) (recA) [Citrobacter sp. C6_1]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCGCTGGGCCAGATCGAAAAGCAATTCGGTAAAGGCTCCAT
CATGCGCCTCGGTGAAGACCGTTCCATGGACGTGGAAACCATCTCCACCGGTTCGCTTTCTCTGGATATCGCATTGGGCG
CGGGCGGTTTGCCAATGGGCCGTATCGTCGAAATCTACGGGCCAGAATCCTCCGGTAAAACAACGCTGACATTACAGGTT
ATTGCCGCCGCACAGCGCGAAGGTAAAACCTGTGCGTTCATCGATGCAGAACACGCGCTGGATCCTGTCTATGCGCGTAA
GCTTGGCGTTGATATTGATAACCTGCTGTGTTCTCAGCCGGATACGGGTGAACAAGCTCTGGAAATCTGTGACGCGCTGG
CGCGTTCTGGCGCAGTCGACGTTATCGTTGTTGACTCCGTTGCTGCACTGACGCCGAAGGCTGAAATCGAAGGTGAGATC
GGTGACTCTCATATGGGTCTTGCGGCACGTATGATGAGCCAGGCAATGCGTAAGCTGGCCGGTAACCTGAAGCAGTCCAA
CACGCTGCTGATTTTCATCAACCAGATTCGTATGAAGATTGGCGTTATGTTCGGTAACCCGGAAACCACTACCGGTGGTA
ATGCCCTGAAATTTTACGCCTCCGTCCGTCTGGATATCCGTCGTATTGGCGCGGTGAAAGAGGGCGATAACGTGGTCGGT
AGCGAAACCCGCGTTAAGGTCGTGAAAAACAAAATTGCAGCACCGTTTAAACAGGCTGAATTCCAGATTCTTTACGGCGA
AGGTATCAACTTCTACGGCGAACTGGTTGACCTGGGCGTGAAAGAGAAGCTGATTGAAAAAGCCGGTGCATGGTACAGCT
ATAACGGTGAGAAAATCGGTCAGGGTAAAGCGAACGCAACCAATTGGCTGAAAGAAAACCCGGCTGCCGCAAAAGAAATT
GAGAAAAAATTACGCGAGTTACTGCTCAATAACCAGGATTCAACGCCCGATTTCTCCGTTGATGACAGTGGTGAAGACGT
AGCAGAAACCAACGAAGATTTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N6JYE5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

82.029

97.458

0.799
  recA Vibrio cholerae strain A1552

82.029

97.458

0.799
  recA Pseudomonas stutzeri DSM 10701

74.184

95.198

0.706
  recA Acinetobacter baumannii D1279779

74.924

92.373

0.692
  recA Acinetobacter baylyi ADP1

74.39

92.655

0.689
  recA Glaesserella parasuis strain SC1401

69.231

99.153

0.686
  recA Neisseria gonorrhoeae MS11

69.325

92.09

0.638
  recA Neisseria gonorrhoeae MS11

69.325

92.09

0.638
  recA Neisseria gonorrhoeae strain FA1090

69.325

92.09

0.638
  recA Ralstonia pseudosolanacearum GMI1000

71.061

87.853

0.624
  recA Streptococcus mitis SK321

59.544

99.153

0.59
  recA Streptococcus mitis NCTC 12261

59.544

99.153

0.59
  recA Helicobacter pylori strain NCTC11637

61.424

95.198

0.585
  recA Helicobacter pylori 26695

61.128

95.198

0.582
  recA Latilactobacillus sakei subsp. sakei 23K

57.865

100

0.582
  recA Lactococcus lactis subsp. cremoris KW2

62.848

91.243

0.573
  recA Streptococcus pneumoniae TIGR4

62.539

91.243

0.571
  recA Streptococcus pneumoniae Rx1

62.539

91.243

0.571
  recA Streptococcus pneumoniae D39

62.539

91.243

0.571
  recA Streptococcus pneumoniae R6

62.539

91.243

0.571
  recA Streptococcus pyogenes NZ131

62.154

91.808

0.571
  recA Bacillus subtilis subsp. subtilis str. 168

62.928

90.678

0.571
  recA Streptococcus mutans UA159

61.846

91.808

0.568
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.728

91.525

0.565
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.639

93.785

0.559
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.123

92.09

0.554