Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   O7776_RS05005 Genome accession   NZ_CP114887
Coordinates   1068366..1069436 (+) Length   356 a.a.
NCBI ID   WP_274309520.1    Uniprot ID   -
Organism   Solibacillus daqui strain ZS111008 isolate Daqu     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1063366..1074436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O7776_RS04980 - 1063959..1064216 (+) 258 WP_274309515.1 DUF3243 domain-containing protein -
  O7776_RS04985 - 1064478..1065275 (+) 798 WP_274309516.1 DUF3388 domain-containing protein -
  O7776_RS04990 - 1065337..1066236 (+) 900 WP_274309517.1 helix-turn-helix domain-containing protein -
  O7776_RS04995 pgsA 1066284..1066862 (+) 579 WP_274309518.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  O7776_RS05000 cinA 1066945..1068198 (+) 1254 WP_274309519.1 competence/damage-inducible protein A Machinery gene
  O7776_RS05005 recA 1068366..1069436 (+) 1071 WP_274309520.1 recombinase RecA Machinery gene
  O7776_RS05010 rny 1069798..1071351 (+) 1554 WP_274309521.1 ribonuclease Y -
  O7776_RS05015 - 1072082..1072990 (+) 909 WP_274309522.1 ATP-grasp fold amidoligase family protein -
  O7776_RS05020 galE 1073312..1074283 (+) 972 WP_274309523.1 UDP-glucose 4-epimerase GalE -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38507.73 Da        Isoelectric Point: 4.8124

>NTDB_id=767388 O7776_RS05005 WP_274309520.1 1068366..1069436(+) (recA) [Solibacillus daqui strain ZS111008 isolate Daqu]
MSDRKAALDMALKQIEKQFGKGSVMKLGENTDRKIETSSSGSIAIDAALGVGGYPRGRIVEIYGPESSGKTTVTLHAIAE
IQANGGTAAFIDAEHALDPVYAQKLGVNIDELLLAQPDTGEQALEIAEALVRSGAIDIIVIDSVAALVPKAEIEGEMGDS
HMGLQARLMSQALRKLSGVINKSNTLAIFINQVREKIGVMFGNPETTTGGRALKFYSSIRLEVRRGEAIKQGTEIVGNKT
KIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIVDIGAELEIIQKSGSWYSYNNERIGQGRENVKAFLKENPAIREEVAEK
IRQSFGIGGDIGYTIGSHDTAEEEEIDELELFEDKK

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=767388 O7776_RS05005 WP_274309520.1 1068366..1069436(+) (recA) [Solibacillus daqui strain ZS111008 isolate Daqu]
TTGAGCGATCGTAAAGCAGCGTTAGATATGGCACTAAAGCAAATTGAAAAACAATTCGGTAAAGGTTCTGTTATGAAGCT
AGGAGAAAATACAGACCGTAAAATCGAAACATCTTCATCAGGTTCAATTGCAATTGATGCGGCATTAGGGGTTGGCGGTT
ATCCACGCGGACGTATTGTGGAAATCTATGGTCCAGAGTCTTCTGGTAAAACAACAGTTACATTACATGCCATTGCAGAA
ATTCAAGCAAATGGTGGTACTGCAGCATTTATCGATGCGGAGCACGCATTAGATCCAGTTTATGCACAAAAGCTAGGTGT
CAATATTGACGAATTATTATTAGCGCAGCCAGATACAGGTGAACAAGCCCTTGAAATCGCAGAAGCATTAGTACGTTCTG
GTGCGATCGATATTATTGTTATCGACTCTGTAGCAGCACTAGTACCAAAAGCAGAGATTGAGGGCGAGATGGGTGACTCA
CATATGGGTCTTCAAGCTCGTTTAATGTCTCAAGCATTACGTAAATTATCAGGTGTTATTAACAAGTCAAACACACTTGC
AATCTTCATCAACCAAGTACGTGAAAAAATCGGGGTAATGTTCGGGAACCCAGAAACAACTACAGGTGGACGTGCATTAA
AATTCTATTCATCTATCCGTTTAGAAGTACGTCGCGGTGAAGCGATTAAGCAAGGTACAGAAATCGTTGGTAACAAAACA
AAAATTAAAGTCGTTAAAAATAAAGTTGCACCACCATTCCGCACAGCAGAAGTAGATATTATGTACGGTGAAGGGATTTC
AAAAGAAGGTGAAATCGTTGACATTGGTGCAGAATTAGAAATTATTCAAAAGAGCGGTTCTTGGTATTCTTACAATAATG
AGCGAATCGGTCAAGGTCGTGAAAATGTAAAAGCCTTCTTAAAAGAAAATCCAGCAATTCGTGAAGAAGTTGCTGAGAAA
ATCCGTCAAAGCTTCGGCATCGGTGGCGATATTGGCTACACAATCGGCTCACACGATACAGCAGAAGAAGAGGAAATTGA
CGAATTAGAATTATTCGAAGACAAAAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

81.04

91.854

0.744
  recA Latilactobacillus sakei subsp. sakei 23K

72

91.292

0.657
  recA Neisseria gonorrhoeae strain FA1090

64.857

98.315

0.638
  recA Neisseria gonorrhoeae MS11

64.857

98.315

0.638
  recA Neisseria gonorrhoeae MS11

64.857

98.315

0.638
  recA Streptococcus mutans UA159

67.173

92.416

0.621
  recA Streptococcus pyogenes NZ131

67.073

92.135

0.618
  recA Acinetobacter baylyi ADP1

63.037

98.034

0.618
  recA Ralstonia pseudosolanacearum GMI1000

65.465

93.539

0.612
  recA Streptococcus mitis NCTC 12261

65.758

92.697

0.61
  recA Streptococcus pneumoniae Rx1

65.758

92.697

0.61
  recA Streptococcus pneumoniae D39

65.758

92.697

0.61
  recA Streptococcus pneumoniae R6

65.758

92.697

0.61
  recA Streptococcus pneumoniae TIGR4

65.758

92.697

0.61
  recA Acinetobacter baumannii D1279779

62.536

97.472

0.61
  recA Streptococcus mitis SK321

65.455

92.697

0.607
  recA Lactococcus lactis subsp. cremoris KW2

64.264

93.539

0.601
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.044

90.169

0.596
  recA Vibrio cholerae strain A1552

66.044

90.169

0.596
  recA Glaesserella parasuis strain SC1401

61.272

97.191

0.596
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.134

92.416

0.593
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.516

96.348

0.593
  recA Pseudomonas stutzeri DSM 10701

64.062

89.888

0.576
  recA Helicobacter pylori strain NCTC11637

62.769

91.292

0.573
  recA Helicobacter pylori 26695

62.462

91.292

0.57
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.562

89.888

0.553