Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   O2T12_RS15095 Genome accession   NZ_CP114886
Coordinates   3649615..3650715 (-) Length   366 a.a.
NCBI ID   WP_269674535.1    Uniprot ID   -
Organism   Endozoicomonas sp. GU-1 strain Ap1-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3644615..3655715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O2T12_RS15080 (O2T12_15080) alaS 3645612..3648245 (-) 2634 WP_347710289.1 alanine--tRNA ligase -
  O2T12_RS15085 (O2T12_15085) - 3648456..3649121 (-) 666 WP_269674533.1 tRNA-uridine aminocarboxypropyltransferase -
  O2T12_RS15090 (O2T12_15090) - 3649155..3649610 (-) 456 WP_269674534.1 regulatory protein RecX -
  O2T12_RS15095 (O2T12_15095) recA 3649615..3650715 (-) 1101 WP_269674535.1 recombinase RecA Machinery gene
  O2T12_RS15100 (O2T12_15100) - 3650856..3651350 (-) 495 WP_269676269.1 CinA family protein -
  O2T12_RS15105 (O2T12_15105) - 3651734..3652261 (-) 528 WP_269674538.1 DUF3299 domain-containing protein -
  O2T12_RS15110 (O2T12_15110) - 3652273..3653535 (-) 1263 WP_269674539.1 ABC transporter permease -
  O2T12_RS15115 (O2T12_15115) - 3653535..3654272 (-) 738 WP_269674540.1 ATP-binding cassette domain-containing protein -
  O2T12_RS15120 (O2T12_15120) - 3654274..3654906 (-) 633 WP_269674541.1 DUF2796 domain-containing protein -
  O2T12_RS15125 (O2T12_15125) - 3654948..3655331 (-) 384 WP_269674542.1 hypothetical protein -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 39014.52 Da        Isoelectric Point: 6.0705

>NTDB_id=767370 O2T12_RS15095 WP_269674535.1 3649615..3650715(-) (recA) [Endozoicomonas sp. GU-1 strain Ap1-3]
MDDNRKKALAAALGQIDRQFGKGAIMRMGDQKQEAIPAISTGSLQLDIALGIGGLPKGRVIEIFGPESSGKTTLTLSVIA
QAQKHGATCAFVDAEHALDPQYAGKLGVNVDDLYVSQPDTGEQALEITDMLVRSGAVDVIVVDSVAALVPKAEIEGDMGD
SHVGLQARLMSQALRKLTGSIKQTNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGSVKQGDEVIGNE
TRVKVVKNKVSPPFRQAEFQILYGQGIYHMGEVIDLGVKLKLVDKSGAWYAYKGTKIGQGKANAAQYLSDNPEVAAEIEA
HIRAELMSTPEKDAAKKAEADAGKSAGKKGDDDAAASVQQDELLAE

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=767370 O2T12_RS15095 WP_269674535.1 3649615..3650715(-) (recA) [Endozoicomonas sp. GU-1 strain Ap1-3]
ATGGATGATAACAGAAAAAAAGCGTTGGCAGCAGCACTTGGCCAGATTGACCGACAGTTTGGTAAAGGTGCCATCATGCG
GATGGGGGATCAGAAGCAGGAAGCAATTCCCGCAATTTCTACCGGTTCTCTGCAACTGGATATTGCCCTGGGCATTGGTG
GCCTGCCGAAAGGCCGTGTTATTGAAATTTTCGGCCCTGAATCTTCCGGTAAAACCACGCTGACCCTGAGCGTTATTGCC
CAGGCCCAGAAGCACGGTGCCACCTGTGCCTTTGTTGATGCTGAGCATGCCCTGGACCCACAGTACGCCGGTAAGCTGGG
TGTAAATGTGGATGACCTGTACGTCTCCCAGCCGGATACCGGTGAACAGGCGCTGGAAATCACCGATATGCTGGTTCGTT
CCGGTGCCGTGGATGTTATCGTGGTTGACTCTGTCGCAGCCCTGGTGCCCAAGGCTGAAATTGAAGGTGACATGGGGGAT
TCCCATGTTGGTCTGCAGGCCCGTCTGATGTCTCAGGCACTGCGTAAGCTGACCGGTTCCATCAAACAGACCAACTGCAT
GGTCATCTTCATTAACCAGATCCGTATGAAGATCGGTGTGATGTTCGGCAACCCGGAAACCACTACCGGCGGTAACGCAC
TGAAATTCTACTCTTCTGTACGTCTTGATATTCGTCGTACCGGTTCGGTGAAGCAGGGCGATGAGGTGATCGGTAACGAA
ACCCGCGTTAAAGTGGTGAAGAACAAGGTATCGCCACCATTCCGTCAGGCTGAATTCCAGATTCTGTACGGTCAGGGCAT
CTACCATATGGGCGAAGTGATTGATCTGGGTGTCAAGCTGAAGCTGGTGGACAAATCCGGTGCCTGGTATGCCTATAAGG
GAACCAAGATTGGTCAGGGTAAAGCCAATGCTGCCCAGTATCTTTCTGATAACCCGGAAGTGGCGGCTGAAATCGAAGCC
CATATCCGTGCTGAGTTAATGAGCACCCCAGAGAAGGACGCTGCAAAAAAAGCCGAAGCTGACGCCGGAAAAAGTGCTGG
CAAAAAAGGTGACGACGATGCAGCGGCAAGTGTTCAGCAGGACGAGCTGCTGGCTGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

80.352

93.169

0.749
  recA Vibrio cholerae strain A1552

73.414

90.437

0.664
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.414

90.437

0.664
  recA Neisseria gonorrhoeae MS11

74.462

88.798

0.661
  recA Neisseria gonorrhoeae MS11

74.462

88.798

0.661
  recA Neisseria gonorrhoeae strain FA1090

74.462

88.798

0.661
  recA Acinetobacter baylyi ADP1

70.674

93.169

0.658
  recA Acinetobacter baumannii D1279779

71.733

89.891

0.645
  recA Glaesserella parasuis strain SC1401

71.037

89.617

0.637
  recA Ralstonia pseudosolanacearum GMI1000

72.381

86.066

0.623
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.278

89.344

0.601
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.142

90.437

0.571
  recA Helicobacter pylori strain NCTC11637

62.651

90.71

0.568
  recA Helicobacter pylori 26695

62.651

90.71

0.568
  recA Bacillus subtilis subsp. subtilis str. 168

64.062

87.432

0.56
  recA Streptococcus mutans UA159

58.621

95.082

0.557
  recA Streptococcus mitis NCTC 12261

59.357

93.443

0.555
  recA Latilactobacillus sakei subsp. sakei 23K

59.76

90.984

0.544
  recA Streptococcus mitis SK321

61.043

89.071

0.544
  recA Streptococcus pyogenes NZ131

60.061

89.617

0.538
  recA Streptococcus pneumoniae Rx1

59.509

89.071

0.53
  recA Streptococcus pneumoniae D39

59.509

89.071

0.53
  recA Streptococcus pneumoniae R6

59.509

89.071

0.53
  recA Streptococcus pneumoniae TIGR4

59.509

89.071

0.53
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.966

88.251

0.503
  recA Lactococcus lactis subsp. cremoris KW2

56.481

88.525

0.5