Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   O6R09_RS08840 Genome accession   NZ_CP114883
Coordinates   1745183..1746340 (-) Length   385 a.a.
NCBI ID   WP_269725632.1    Uniprot ID   -
Organism   Streptococcus alactolyticus strain LGM     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1743265..1744521 1745183..1746340 flank 662


Gene organization within MGE regions


Location: 1743265..1746340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O6R09_RS08830 (O6R09_08830) - 1743265..1744521 (+) 1257 WP_269725566.1 ISL3 family transposase -
  O6R09_RS08835 (O6R09_08835) spx 1744686..1745084 (-) 399 WP_154454975.1 transcriptional regulator Spx -
  O6R09_RS08840 (O6R09_08840) recA 1745183..1746340 (-) 1158 WP_269725632.1 recombinase RecA Machinery gene

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 41420.98 Da        Isoelectric Point: 4.9032

>NTDB_id=767352 O6R09_RS08840 WP_269725632.1 1745183..1746340(-) (recA) [Streptococcus alactolyticus strain LGM]
MAKKTKKTEAVTKKFGDERKKALDDALKMIEKDFGKGAVMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGVAAFIDAEHALDPSYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDNHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSSIRLDVRG
NTQIKGTGDQKDSSIGKETKIKVVKNKVAPPFKTAEVEIMYGEGISRTGELLKIASDLNIIKKAGAWFSYNDDKIGQGSE
NAKKYLSDHPEIFDEIDHKVRVHYGLIDDADAPDAPVASDNEEPTQKEPSDEVVLDLEDTIEIEE

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=767352 O6R09_RS08840 WP_269725632.1 1745183..1746340(-) (recA) [Streptococcus alactolyticus strain LGM]
TTGGCAAAAAAAACAAAGAAAACAGAAGCTGTTACTAAAAAATTTGGTGACGAGCGTAAAAAAGCACTAGATGATGCTTT
GAAAATGATTGAAAAAGATTTCGGGAAAGGCGCTGTGATGCGACTTGGCGAGCGTGCAGAACAAAAAGTTCAAGTGATGA
GCTCAGGTAGTTTAGCTCTTGATATTGCACTTGGAGCTGGTGGCTATCCTAAAGGACGTATCATTGAAATCTACGGACCT
GAATCTTCAGGTAAAACAACGGTCGCCCTTCATGCCGTTGCGCAAGCTCAAAAAGAAGGTGGTGTGGCAGCCTTTATCGA
TGCTGAACACGCTTTGGACCCATCTTATGCCGCAGCTCTTGGGGTTAATATTGATGAACTTTTGTTATCACAACCTGATT
CAGGTGAACAAGGACTTGAGATTGCAGGGAAATTGATTGATTCTGGTGCCGTTGACCTTGTCGTTGTCGATTCAGTGGCA
GCTTTGGTACCGCGTGCTGAAATTGATGGTGATATTGGTGATAACCACGTTGGTTTGCAAGCTCGTATGATGAGCCAAGC
CATGCGTAAATTATCTGCTTCTATCAACAAAACAAAAACCATCGCTATTTTCATTAACCAGTTGCGTGAAAAAGTTGGTG
TGATGTTTGGAAACCCTGAGACAACTCCTGGTGGACGTGCCTTGAAGTTTTATTCTTCTATTCGTCTAGATGTGCGTGGT
AACACACAAATCAAGGGAACAGGTGACCAAAAAGATAGCAGCATCGGTAAAGAAACCAAGATCAAAGTTGTTAAAAACAA
GGTGGCTCCACCCTTTAAAACAGCTGAAGTGGAAATCATGTACGGAGAAGGAATTTCACGAACGGGTGAATTGCTTAAAA
TCGCCAGTGATTTGAATATCATCAAGAAAGCTGGTGCTTGGTTCTCTTACAATGACGACAAAATTGGTCAAGGTTCAGAG
AATGCGAAGAAATACTTGAGTGACCACCCTGAAATCTTCGATGAAATTGACCATAAAGTGCGCGTGCATTATGGTTTAAT
TGACGATGCTGACGCTCCTGATGCTCCAGTTGCTAGCGACAACGAAGAGCCAACTCAAAAAGAACCATCAGACGAAGTGG
TTCTTGACCTCGAAGATACGATCGAAATTGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus pyogenes NZ131

86.269

100

0.865
  recA Streptococcus mutans UA159

85.714

100

0.857
  recA Streptococcus mitis NCTC 12261

84.416

100

0.844
  recA Streptococcus pneumoniae D39

84.156

100

0.842
  recA Streptococcus pneumoniae R6

84.156

100

0.842
  recA Streptococcus pneumoniae TIGR4

84.156

100

0.842
  recA Streptococcus mitis SK321

84.156

100

0.842
  recA Streptococcus pneumoniae Rx1

84.156

100

0.842
  recA Lactococcus lactis subsp. cremoris KW2

77.429

90.909

0.704
  recA Latilactobacillus sakei subsp. sakei 23K

68.497

89.87

0.616
  recA Bacillus subtilis subsp. subtilis str. 168

68.085

85.455

0.582
  recA Glaesserella parasuis strain SC1401

57.412

96.364

0.553
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.357

88.052

0.54
  recA Neisseria gonorrhoeae strain FA1090

61.329

85.974

0.527
  recA Neisseria gonorrhoeae MS11

61.329

85.974

0.527
  recA Neisseria gonorrhoeae MS11

61.329

85.974

0.527
  recA Acinetobacter baylyi ADP1

58.333

90.39

0.527
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.3

83.896

0.514
  recA Vibrio cholerae strain A1552

60.615

84.416

0.512
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.615

84.416

0.512
  recA Acinetobacter baumannii D1279779

60.429

84.675

0.512
  recA Pseudomonas stutzeri DSM 10701

56.977

89.351

0.509
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.912

85.974

0.506
  recA Helicobacter pylori strain NCTC11637

56.268

89.091

0.501
  recA Helicobacter pylori 26695

56.268

89.091

0.501
  recA Ralstonia pseudosolanacearum GMI1000

58.044

82.338

0.478