Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   O4Z47_RS04925 Genome accession   NZ_CP114874
Coordinates   1029417..1030559 (+) Length   380 a.a.
NCBI ID   WP_070085303.1    Uniprot ID   -
Organism   Lactiplantibacillus plantarum strain LL441     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1024417..1035559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O4Z47_RS04905 (O4Z47_04905) yfmH 1024907..1026208 (+) 1302 WP_003644640.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  O4Z47_RS04910 (O4Z47_04910) - 1026312..1027184 (+) 873 WP_003641501.1 helix-turn-helix domain-containing protein -
  O4Z47_RS04915 (O4Z47_04915) pgsA 1027207..1027791 (+) 585 WP_003641502.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  O4Z47_RS04920 (O4Z47_04920) cinA 1028063..1029325 (+) 1263 WP_070085304.1 competence/damage-inducible protein A Machinery gene
  O4Z47_RS04925 (O4Z47_04925) recA 1029417..1030559 (+) 1143 WP_070085303.1 recombinase RecA Machinery gene
  O4Z47_RS04930 (O4Z47_04930) rny 1030790..1032349 (+) 1560 WP_003644638.1 ribonuclease Y -
  O4Z47_RS04935 (O4Z47_04935) - 1032474..1033280 (+) 807 WP_003641506.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 380 a.a.        Molecular weight: 40665.96 Da        Isoelectric Point: 5.3835

>NTDB_id=767277 O4Z47_RS04925 WP_070085303.1 1029417..1030559(+) (recA) [Lactiplantibacillus plantarum strain LL441]
MADARKAALDTALKKIEKNFGKGAIMRMGDAAQTTISTISSGSLALDDALGVGGYPRGRIVEIYGPESSGKTTVALHAVA
EVQKQGGTAAYIDAENALDPVYAEHLGVNIDDLLLSQPDTGEQGLEIADALVSSGAVDILVIDSVAALVPRAEIEGEMGD
AHVGLQARLMSQALRKLSGTLNKTKTIALFINQIREKVGVMFGNPETTPGGRALKFYATIRLEVRRAEQIKEGTNIIGNR
VRIKVVKNKVAPPFKRAEVDIMYGQGISQTGEIVDMAAEKDIVKKSGSWYSYGDDRIGQGRENAKKYLDEHPDVMTEIRQ
KVRDAYGMDATGEETSETDDQAKEAKDKGTAKNGSKGQSKSTKATPAETALDLGDQPTEK

Nucleotide


Download         Length: 1143 bp        

>NTDB_id=767277 O4Z47_RS04925 WP_070085303.1 1029417..1030559(+) (recA) [Lactiplantibacillus plantarum strain LL441]
TTGGCTGATGCACGGAAAGCAGCACTAGATACTGCCCTGAAAAAGATCGAAAAGAATTTCGGTAAAGGGGCGATTATGCG
GATGGGTGACGCTGCCCAGACGACTATTTCAACGATTTCAAGTGGATCGTTGGCCTTAGATGACGCGTTGGGTGTCGGCG
GCTACCCACGTGGTCGGATCGTGGAAATCTACGGTCCTGAAAGTTCAGGTAAAACGACCGTGGCACTACATGCGGTTGCT
GAAGTTCAAAAGCAGGGTGGTACGGCGGCCTATATCGATGCTGAAAACGCACTAGACCCCGTTTATGCGGAACACCTAGG
GGTCAACATTGATGACCTGTTACTTTCGCAACCAGATACTGGTGAACAAGGGCTTGAAATTGCAGATGCCTTAGTTTCCA
GTGGTGCGGTCGATATTTTAGTTATTGACTCGGTGGCGGCCTTAGTGCCACGTGCCGAAATTGAAGGTGAAATGGGTGAC
GCACACGTTGGGTTACAAGCGCGGCTGATGTCACAAGCGCTCCGGAAGTTATCAGGGACATTGAACAAAACCAAGACAAT
CGCGTTATTTATCAATCAAATTCGTGAAAAAGTTGGTGTGATGTTTGGTAATCCTGAAACGACTCCTGGTGGTCGGGCCT
TGAAATTTTACGCCACGATTCGTTTGGAAGTACGGCGGGCAGAACAGATCAAGGAAGGAACCAATATTATTGGTAACCGT
GTCCGGATCAAAGTCGTTAAGAACAAGGTTGCACCGCCATTTAAGCGTGCCGAAGTGGATATCATGTATGGTCAAGGTAT
CTCACAAACTGGTGAAATTGTTGATATGGCTGCTGAAAAGGATATTGTTAAGAAGAGTGGTTCTTGGTATTCATATGGTG
ACGATCGCATTGGTCAAGGCCGTGAAAATGCCAAGAAGTATTTGGACGAGCATCCTGATGTCATGACGGAGATTCGCCAA
AAGGTTCGTGATGCATACGGTATGGATGCAACTGGTGAAGAAACGTCTGAAACTGATGATCAGGCCAAAGAAGCTAAGGA
TAAGGGAACTGCTAAGAATGGCAGTAAGGGTCAAAGTAAGTCCACTAAAGCGACACCAGCGGAAACTGCTCTCGATCTCG
GCGACCAACCAACCGAAAAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

84.118

89.474

0.753
  recA Bacillus subtilis subsp. subtilis str. 168

74.398

87.368

0.65
  recA Streptococcus pneumoniae D39

64.721

99.211

0.642
  recA Streptococcus pneumoniae R6

64.721

99.211

0.642
  recA Streptococcus pneumoniae TIGR4

64.721

99.211

0.642
  recA Streptococcus pneumoniae Rx1

64.721

99.211

0.642
  recA Streptococcus mitis SK321

63.13

99.211

0.626
  recA Streptococcus mitis NCTC 12261

62.865

99.211

0.624
  recA Streptococcus pyogenes NZ131

66.006

92.895

0.613
  recA Streptococcus mutans UA159

65.352

93.421

0.611
  recA Lactococcus lactis subsp. cremoris KW2

69.512

86.316

0.6
  recA Ralstonia pseudosolanacearum GMI1000

61.628

90.526

0.558
  recA Neisseria gonorrhoeae MS11

59.942

91.316

0.547
  recA Neisseria gonorrhoeae MS11

59.942

91.316

0.547
  recA Neisseria gonorrhoeae strain FA1090

59.942

91.316

0.547
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.593

90.526

0.539
  recA Vibrio cholerae strain A1552

59.593

90.526

0.539
  recA Acinetobacter baylyi ADP1

58.841

90.789

0.534
  recA Pseudomonas stutzeri DSM 10701

62.229

85

0.529
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.846

85.526

0.529
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.391

90.789

0.521
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.756

86.316

0.516
  recA Glaesserella parasuis strain SC1401

59.938

84.737

0.508
  recA Acinetobacter baumannii D1279779

59.568

85.263

0.508
  recA Helicobacter pylori 26695

58.642

85.263

0.5
  recA Helicobacter pylori strain NCTC11637

58.642

85.263

0.5