Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   O5O48_RS00480 Genome accession   NZ_CP114836
Coordinates   94017..95054 (-) Length   345 a.a.
NCBI ID   WP_088275623.1    Uniprot ID   A0AAQ1G8B4
Organism   Halopseudomonas sp. MFKK-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 89017..100054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O5O48_RS00450 - 89497..90144 (-) 648 WP_269687818.1 response regulator transcription factor -
  O5O48_RS00455 - 90293..91258 (+) 966 WP_269687819.1 DMT family transporter -
  O5O48_RS00460 - 91252..91935 (-) 684 WP_269687820.1 DTW domain-containing protein -
  O5O48_RS00465 - 92106..92504 (+) 399 WP_269687821.1 PA3611 family quorum-sensing-regulated virulence factor -
  O5O48_RS00470 - 92516..93601 (+) 1086 WP_228247331.1 LOG family protein -
  O5O48_RS00475 - 93561..94004 (-) 444 WP_088275622.1 regulatory protein RecX -
  O5O48_RS00480 recA 94017..95054 (-) 1038 WP_088275623.1 recombinase RecA Machinery gene
  O5O48_RS00485 - 95166..95687 (-) 522 WP_269687822.1 nicotinamide-nucleotide amidohydrolase family protein -
  O5O48_RS00490 - 95766..95942 (-) 177 WP_228247329.1 hypothetical protein -
  O5O48_RS00495 mutS 95929..98508 (+) 2580 WP_269687823.1 DNA mismatch repair protein MutS -
  O5O48_RS00500 fdxA 98654..98977 (+) 324 WP_088275627.1 ferredoxin FdxA -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 36946.20 Da        Isoelectric Point: 5.9959

>NTDB_id=767208 O5O48_RS00480 WP_088275623.1 94017..95054(-) (recA) [Halopseudomonas sp. MFKK-1]
MDENKKKALSAALSQIERQFGKGAVMRMGDHERQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKHGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
HHVGVQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVAPPFRQAEFQILYGTGIYHNAEIIDLGVQIGLVEKSGAWYSYQGNKIGQGKANAAKFLQDNQQIADEIEK
AIRDQLLAKPGKAKAEAEADAELEG

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=767208 O5O48_RS00480 WP_088275623.1 94017..95054(-) (recA) [Halopseudomonas sp. MFKK-1]
ATGGACGAGAACAAAAAGAAGGCGCTGTCGGCTGCCTTGAGCCAGATTGAACGTCAGTTTGGCAAGGGCGCGGTAATGCG
CATGGGTGATCACGAGCGCCAGGCCATTCCGGCCATCTCCACCGGCTCGCTCGGTCTGGATATCGCCCTCGGTATCGGCG
GCCTGCCCAAGGGCCGTATTGTTGAAATCTACGGGCCGGAGTCCTCCGGTAAAACCACGCTGACCCTGTCGGTTATTGCC
CAGGCGCAGAAGCACGGTGCAACCTGCGCCTTCGTTGATGCCGAGCACGCGCTGGACCCGGAGTATGCCGGCAAGCTGGG
TGTCAACGTGGATGACCTGCTGGTGTCGCAGCCCGATACCGGTGAGCAGGCACTGGAAATCACCGACATGCTGGTGCGCT
CCAATGCGGTTGACGTGATCATCGTCGACTCGGTGGCAGCGCTGGTGCCCAAGGCCGAAATCGAAGGCGAGATGGGTGAT
CACCACGTCGGTGTGCAGGCCCGTCTGATGTCCCAGGCGCTGCGCAAGATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGCATGAAGATTGGCGTCATGTTCGGCAACCCGGAAACCACCACCGGTGGTAACGCGC
TCAAGTTCTACTCTTCTGTGCGTCTGGACATTCGCCGTACCGGCGCGGTCAAGGAAGGCGACGAGGTTGTCGGCAGCGAG
ACCCGCGTCAAAGTCGTGAAAAACAAGGTGGCTCCGCCGTTCCGTCAGGCTGAATTCCAGATTCTGTACGGTACCGGCAT
CTACCACAACGCCGAGATCATCGATCTGGGCGTGCAGATTGGTCTGGTTGAGAAATCCGGCGCCTGGTACAGCTATCAGG
GCAACAAGATCGGTCAGGGCAAGGCCAATGCAGCCAAGTTCCTGCAGGATAACCAGCAGATCGCGGATGAAATCGAGAAG
GCCATCCGTGACCAGTTGCTGGCCAAGCCGGGCAAGGCCAAGGCGGAGGCTGAAGCCGATGCCGAGCTGGAAGGCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

86.455

100

0.87
  recA Acinetobacter baylyi ADP1

73.699

100

0.739
  recA Acinetobacter baumannii D1279779

73.623

100

0.736
  recA Glaesserella parasuis strain SC1401

70.468

99.13

0.699
  recA Vibrio cholerae strain A1552

73.394

94.783

0.696
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.394

94.783

0.696
  recA Ralstonia pseudosolanacearum GMI1000

71.517

93.623

0.67
  recA Neisseria gonorrhoeae MS11

70.988

93.913

0.667
  recA Neisseria gonorrhoeae MS11

70.988

93.913

0.667
  recA Neisseria gonorrhoeae strain FA1090

70.988

93.913

0.667
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.526

94.783

0.612
  recA Helicobacter pylori strain NCTC11637

62.997

94.783

0.597
  recA Helicobacter pylori 26695

62.385

94.783

0.591
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.237

97.681

0.588
  recA Bacillus subtilis subsp. subtilis str. 168

62.112

93.333

0.58
  recA Streptococcus mutans UA159

59.939

94.783

0.568
  recA Streptococcus mitis NCTC 12261

57.353

98.551

0.565
  recA Streptococcus mitis SK321

56.765

98.551

0.559
  recA Streptococcus pyogenes NZ131

58.462

94.203

0.551
  recA Latilactobacillus sakei subsp. sakei 23K

59.19

93.043

0.551
  recA Streptococcus pneumoniae Rx1

58.282

94.493

0.551
  recA Streptococcus pneumoniae D39

58.282

94.493

0.551
  recA Streptococcus pneumoniae R6

58.282

94.493

0.551
  recA Streptococcus pneumoniae TIGR4

58.282

94.493

0.551
  recA Lactococcus lactis subsp. cremoris KW2

56.347

93.623

0.528
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.657

94.783

0.528