Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   O5637_RS06460 Genome accession   NZ_CP114784
Coordinates   1101064..1102197 (+) Length   377 a.a.
NCBI ID   WP_269603549.1    Uniprot ID   -
Organism   Prochlorococcus marinus str. MIT 0917     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1096064..1107197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O5637_RS06425 - 1096438..1096749 (-) 312 WP_269603539.1 50S ribosomal protein L23 -
  O5637_RS06430 rplD 1096742..1097377 (-) 636 WP_269606934.1 50S ribosomal protein L4 -
  O5637_RS06435 rplC 1097377..1098033 (-) 657 WP_269603541.1 50S ribosomal protein L3 -
  O5637_RS06440 - 1098404..1098868 (+) 465 WP_269603543.1 NAD(P)H-quinone oxidoreductase subunit N -
  O5637_RS06445 - 1098881..1099903 (+) 1023 WP_269603545.1 LdpA C-terminal domain-containing domain -
  O5637_RS06455 - 1100171..1100950 (+) 780 WP_269603547.1 HAD family hydrolase -
  O5637_RS06460 recA 1101064..1102197 (+) 1134 WP_269603549.1 recombinase RecA Machinery gene
  O5637_RS06465 - 1102218..1102457 (-) 240 WP_269603550.1 DUF2839 domain-containing protein -
  O5637_RS06470 - 1102495..1103943 (-) 1449 WP_269603552.1 helicase -
  O5637_RS06475 - 1104017..1104892 (+) 876 WP_269603554.1 prephenate/arogenate dehydrogenase -
  O5637_RS06480 crtD 1104885..1106402 (-) 1518 WP_269603555.1 C-3',4' desaturase CrtD -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 40362.01 Da        Isoelectric Point: 7.3232

>NTDB_id=767105 O5637_RS06460 WP_269603549.1 1101064..1102197(+) (recA) [Prochlorococcus marinus str. MIT 0917]
MSNEGKSLQSTESKKIDAKSGEKEKALSLVVGQIERNFGKGSIMRLGDASKMRVETISTGALTLDLALGGGYPKGRVIEV
YGPESSGKTTLTLHAIAEIQRNGGVAAFVDAEHALDPVYAASLGVDVENLLVSQPDTGEMALEIVDQLIRSAAVDLVVVD
SVAALTPRSEIEGEMGDHSVGAQARLMSQAMRKITGNIGKSGCTVIFLNQLRLKIGITYGNPETTTGGNALKFYASVRLD
IRRIQTLKRGTEEYGIRAKVKVAKNKVAPPFRIAEFDILFGKGISTLGCLLDLADETNVVTRKGAWYSYEGDNIGQGRDN
TITWLEQNPESKEIIEKLVKDKLTEGSEVSANSMRPLAAAARHASLRPSLSQVSANG

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=767105 O5637_RS06460 WP_269603549.1 1101064..1102197(+) (recA) [Prochlorococcus marinus str. MIT 0917]
ATGTCAAACGAAGGTAAGTCACTCCAATCGACTGAATCCAAGAAAATAGACGCAAAATCTGGAGAAAAAGAAAAAGCATT
AAGCTTAGTAGTTGGGCAAATAGAACGCAATTTCGGGAAAGGTTCGATCATGCGTCTTGGGGACGCGTCAAAGATGCGGG
TAGAAACAATATCTACGGGTGCTTTAACTCTTGATTTGGCTCTTGGTGGCGGCTATCCCAAAGGACGTGTAATTGAAGTA
TATGGTCCCGAAAGTTCTGGGAAAACAACGCTGACATTACATGCGATAGCTGAGATTCAACGTAACGGCGGAGTTGCTGC
ATTTGTAGATGCAGAACATGCTCTTGACCCAGTCTATGCAGCTTCTCTTGGTGTTGATGTAGAGAATCTTCTAGTATCTC
AACCGGATACAGGCGAGATGGCATTGGAAATCGTTGACCAACTTATTAGATCTGCTGCAGTCGATCTAGTAGTTGTTGAT
TCAGTCGCTGCACTTACGCCTCGTTCAGAGATAGAAGGAGAGATGGGTGACCATTCAGTAGGTGCTCAAGCTCGTCTTAT
GAGTCAAGCAATGAGAAAAATTACTGGAAATATTGGCAAGTCTGGTTGCACAGTGATTTTCTTAAATCAATTACGTCTAA
AAATTGGTATTACATATGGGAATCCAGAAACAACCACTGGTGGAAACGCTCTTAAATTTTATGCCTCTGTAAGATTAGAT
ATTCGTCGTATTCAAACGTTAAAGAGAGGAACTGAAGAATATGGAATTCGTGCAAAAGTAAAAGTCGCAAAAAACAAAGT
TGCGCCTCCATTCCGAATAGCCGAATTTGATATTCTATTTGGAAAAGGAATTAGTACTCTTGGTTGTCTTCTGGATTTAG
CAGATGAGACTAATGTCGTTACTCGTAAAGGAGCTTGGTATAGCTATGAAGGTGACAATATTGGGCAAGGAAGAGACAAT
ACCATTACTTGGCTTGAACAAAATCCTGAATCAAAAGAAATAATTGAAAAATTAGTTAAAGACAAATTAACTGAGGGCTC
AGAAGTAAGTGCTAATTCAATGAGACCATTAGCCGCGGCTGCTCGACATGCTTCATTACGACCAAGCCTAAGCCAAGTTT
CAGCTAACGGCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(25-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

63.746

87.798

0.56
  recA Ralstonia pseudosolanacearum GMI1000

62.162

88.329

0.549
  recA Neisseria gonorrhoeae strain FA1090

59.71

91.512

0.546
  recA Acinetobacter baumannii D1279779

63.975

85.411

0.546
  recA Neisseria gonorrhoeae MS11

59.71

91.512

0.546
  recA Neisseria gonorrhoeae MS11

59.71

91.512

0.546
  recA Pseudomonas stutzeri DSM 10701

63.043

85.411

0.538
  recA Helicobacter pylori strain NCTC11637

59.467

89.655

0.533
  recA Helicobacter pylori 26695

59.467

89.655

0.533
  recA Streptococcus pneumoniae Rx1

55.866

94.96

0.531
  recA Streptococcus pneumoniae D39

55.866

94.96

0.531
  recA Streptococcus pneumoniae R6

55.866

94.96

0.531
  recA Streptococcus pneumoniae TIGR4

55.866

94.96

0.531
  recA Vibrio cholerae strain A1552

61.491

85.411

0.525
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.491

85.411

0.525
  recA Glaesserella parasuis strain SC1401

57.31

90.716

0.52
  recA Streptococcus mitis NCTC 12261

54.622

94.695

0.517
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.062

85.676

0.515
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.055

87.268

0.507
  recA Streptococcus mutans UA159

55.556

90.716

0.504
  recA Bacillus subtilis subsp. subtilis str. 168

59.19

85.146

0.504
  recA Streptococcus mitis SK321

56.716

88.859

0.504
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.556

88.329

0.491
  recA Lactococcus lactis subsp. cremoris KW2

54.167

89.125

0.483
  recA Streptococcus pyogenes NZ131

55.046

86.737

0.477
  recA Latilactobacillus sakei subsp. sakei 23K

58.689

80.902

0.475