Detailed information NTG0767096

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QN220_RS04980
• Genome accession: NZ_CP126343
• Coordinates: 1031823..1032815 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain DAX4
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1026823..1037815

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QN220_RS04950 (QN220_04950)	ispD	1026884..1027594 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QN220_RS04955 (QN220_04955)	ispF	1027594..1028073 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QN220_RS04960 (QN220_04960)	truD	1028070..1029119 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
QN220_RS04965 (QN220_04965)	surE	1029100..1029861 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QN220_RS04970 (QN220_04970)	pcm	1029855..1030481 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QN220_RS04975 (QN220_04975)	nlpD	1030666..1031760 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
QN220_RS04980 (QN220_04980)	rpoS	1031823..1032815 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QN220_RS04985 (QN220_04985)	ygbN	1032909..1034273 (-)	1365	WP_000104441.1	GntP family transporter	-
QN220_RS04990 (QN220_04990)	ygbM	1034362..1035138 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
QN220_RS04995 (QN220_04995)	ygbL	1035143..1035781 (-)	639	WP_001278994.1	aldolase	-
QN220_RS05000 (QN220_05000)	otnK	1035778..1037040 (-)	1263	WP_284562173.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=767096 QN220_RS04980 WP_000081550.1 1031823..1032815(+) (rpoS) [Escherichia coli strain DAX4]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=767096 QN220_RS04980 WP_000081550.1 1031823..1032815(+) (rpoS) [Escherichia coli strain DAX4]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715