Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   O5638_RS06470 Genome accession   NZ_CP114782
Coordinates   1072062..1073195 (+) Length   377 a.a.
NCBI ID   WP_269611583.1    Uniprot ID   -
Organism   Prochlorococcus marinus str. MIT 0913     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1067062..1078195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O5638_RS06435 - 1067436..1067747 (-) 312 WP_038654359.1 50S ribosomal protein L23 -
  O5638_RS06440 rplD 1067740..1068375 (-) 636 WP_269613816.1 50S ribosomal protein L4 -
  O5638_RS06445 rplC 1068375..1069031 (-) 657 WP_269616277.1 50S ribosomal protein L3 -
  O5638_RS06450 - 1069402..1069866 (+) 465 WP_269611580.1 NAD(P)H-quinone oxidoreductase subunit N -
  O5638_RS06455 - 1069879..1070901 (+) 1023 WP_269616278.1 LdpA C-terminal domain-containing domain -
  O5638_RS06465 - 1071170..1071949 (+) 780 WP_269616279.1 HAD family hydrolase -
  O5638_RS06470 recA 1072062..1073195 (+) 1134 WP_269611583.1 recombinase RecA Machinery gene
  O5638_RS06475 - 1073215..1073454 (-) 240 WP_269616281.1 DUF2839 domain-containing protein -
  O5638_RS06480 - 1073493..1074941 (-) 1449 WP_269616283.1 helicase -
  O5638_RS06485 - 1075015..1075875 (+) 861 WP_269616284.1 prephenate/arogenate dehydrogenase -
  O5638_RS06490 crtD 1075882..1077399 (-) 1518 WP_269616285.1 C-3',4' desaturase CrtD -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 40337.94 Da        Isoelectric Point: 7.2478

>NTDB_id=767087 O5638_RS06470 WP_269611583.1 1072062..1073195(+) (recA) [Prochlorococcus marinus str. MIT 0913]
MSNEGKSLQSTEPKKIDAKSGEKEKALSLVVGQIERNFGKGSIMRLGDASKMRVETISTGALTLDLALGGGYPKGRVIEV
YGPESSGKTTLTLHAIAEIQRNGGVAAFVDAEHALDPVYAASLGVDVENLLVSQPDTGEMALEIVDQLIRSAAVDLVVVD
SVAALTPRSEIEGEMGDHSVGAQARLMSQAMRKITGNIGKSGCTVIFLNQLRLKIGITYGNPETTTGGNALKFYASVRLD
IRRIQTLKRGTEEYGIRAKVKVAKNKVAPPFRIAEFDILFGKGISTLGCLLDLADETNVVTRKGAWYSYEGDNIGQGRDN
TITWLEQNPESKDIIEKLVKEKLTEGSEVSANSMRPLAAAARQASSRANLSQVSANG

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=767087 O5638_RS06470 WP_269611583.1 1072062..1073195(+) (recA) [Prochlorococcus marinus str. MIT 0913]
ATGTCAAACGAAGGTAAGTCACTCCAATCAACTGAACCTAAGAAAATAGACGCAAAATCTGGCGAAAAAGAAAAAGCATT
GAGCTTAGTTGTTGGGCAAATAGAACGTAATTTCGGGAAGGGTTCGATCATGCGCCTTGGGGACGCGTCAAAGATGCGAG
TAGAAACAATATCTACGGGTGCTTTAACTCTTGATTTAGCTCTTGGTGGCGGCTATCCCAAAGGACGTGTAATTGAAGTT
TATGGTCCCGAAAGTTCTGGGAAAACAACACTGACATTACATGCGATAGCTGAGATTCAACGTAACGGCGGAGTTGCTGC
ATTTGTAGATGCAGAACATGCTCTTGACCCAGTCTATGCAGCCTCTCTTGGTGTTGATGTAGAGAATCTTCTCGTATCTC
AACCGGACACAGGCGAGATGGCATTGGAAATCGTTGACCAACTTATTAGATCTGCTGCAGTCGATCTAGTTGTTGTTGAT
TCAGTCGCGGCACTTACGCCCCGTTCAGAGATAGAAGGAGAAATGGGTGATCATTCAGTAGGTGCTCAAGCTCGTCTAAT
GAGTCAAGCAATGAGAAAAATTACTGGAAATATTGGCAAGTCTGGTTGCACAGTAATTTTCTTAAATCAGTTACGTCTAA
AAATTGGTATTACGTATGGGAATCCAGAAACAACAACTGGTGGAAACGCTCTTAAGTTTTATGCCTCTGTAAGATTAGAT
ATTCGTCGTATTCAAACGTTAAAGAGAGGAACTGAAGAATATGGAATTCGTGCAAAAGTGAAAGTCGCAAAAAACAAAGT
TGCACCTCCATTCCGAATAGCCGAATTTGATATTCTTTTTGGGAAAGGAATTAGTACTCTTGGTTGTCTTCTTGATTTAG
CAGATGAGACTAATGTCGTTACTCGTAAAGGAGCTTGGTATAGCTATGAAGGTGACAATATTGGGCAAGGGAGAGACAAT
ACCATTACTTGGCTTGAACAAAATCCTGAATCAAAAGATATCATTGAAAAGTTAGTTAAAGAAAAATTAACTGAAGGCTC
AGAAGTAAGTGCTAATTCAATGAGACCATTAGCGGCAGCTGCTCGACAAGCTTCATCACGAGCAAACCTAAGCCAAGTTT
CAGCGAACGGTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(25-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

64.048

87.798

0.562
  recA Ralstonia pseudosolanacearum GMI1000

62.84

87.798

0.552
  recA Acinetobacter baumannii D1279779

63.975

85.411

0.546
  recA Neisseria gonorrhoeae strain FA1090

58.841

91.512

0.538
  recA Neisseria gonorrhoeae MS11

58.841

91.512

0.538
  recA Neisseria gonorrhoeae MS11

58.841

91.512

0.538
  recA Helicobacter pylori 26695

60.059

89.655

0.538
  recA Helicobacter pylori strain NCTC11637

60.059

89.655

0.538
  recA Pseudomonas stutzeri DSM 10701

63.043

85.411

0.538
  recA Glaesserella parasuis strain SC1401

54.155

98.939

0.536
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.76

88.329

0.528
  recA Vibrio cholerae strain A1552

61.801

85.411

0.528
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.801

85.411

0.528
  recA Streptococcus pneumoniae Rx1

56.091

93.634

0.525
  recA Streptococcus pneumoniae D39

56.091

93.634

0.525
  recA Streptococcus pneumoniae R6

56.091

93.634

0.525
  recA Streptococcus pneumoniae TIGR4

56.091

93.634

0.525
  recA Streptococcus mitis NCTC 12261

55.114

93.369

0.515
  recA Bacillus subtilis subsp. subtilis str. 168

59.502

85.146

0.507
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.055

87.268

0.507
  recA Streptococcus mutans UA159

55.848

90.716

0.507
  recA Streptococcus mitis SK321

56.97

87.533

0.499
  recA Lactococcus lactis subsp. cremoris KW2

54.464

89.125

0.485
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.595

83.82

0.483
  recA Streptococcus pyogenes NZ131

55.352

86.737

0.48
  recA Latilactobacillus sakei subsp. sakei 23K

57.508

83.024

0.477