Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   O5634_RS06580 Genome accession   NZ_CP114781
Coordinates   1224938..1226071 (+) Length   377 a.a.
NCBI ID   WP_036904541.1    Uniprot ID   A0A0A2C8Z1
Organism   Prochlorococcus marinus str. MIT 0915     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1219938..1231071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O5634_RS06545 - 1220314..1220625 (-) 312 WP_269614165.1 50S ribosomal protein L23 -
  O5634_RS06550 rplD 1220618..1221253 (-) 636 WP_269616010.1 50S ribosomal protein L4 -
  O5634_RS06555 rplC 1221253..1221909 (-) 657 WP_269614166.1 50S ribosomal protein L3 -
  O5634_RS06560 - 1222279..1222743 (+) 465 WP_269614167.1 NAD(P)H-quinone oxidoreductase subunit N -
  O5634_RS06565 - 1222756..1223778 (+) 1023 WP_269614168.1 LdpA C-terminal domain-containing domain -
  O5634_RS06575 - 1224046..1224825 (+) 780 WP_269614170.1 HAD family hydrolase -
  O5634_RS06580 recA 1224938..1226071 (+) 1134 WP_036904541.1 recombinase RecA Machinery gene
  O5634_RS06585 - 1226091..1226330 (-) 240 WP_011824519.1 DUF2839 domain-containing protein -
  O5634_RS06590 - 1226367..1227815 (-) 1449 WP_269614171.1 helicase -
  O5634_RS06595 - 1227889..1228764 (+) 876 WP_269614172.1 prephenate/arogenate dehydrogenase -
  O5634_RS06600 crtD 1228757..1230274 (-) 1518 WP_269614174.1 C-3',4' desaturase CrtD -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 40394.00 Da        Isoelectric Point: 7.2479

>NTDB_id=767078 O5634_RS06580 WP_036904541.1 1224938..1226071(+) (recA) [Prochlorococcus marinus str. MIT 0915]
MSNEGKPLQSTESKKIDAKSGEKEKALSLVVGQIERNFGKGSIMRLGDASKMRVETISTGALTLDLALGGGYPKGRVIEV
YGPESSGKTTLTLHAIAEIQRNGGVAAFVDAEHALDPVYAASLGVDVENLLVSQPDTGEMALEIVDQLIRSAAVDLVVVD
SVAALTPRSEIEGEMGDHSVGAQARLMSQAMRKITGNIGKSGCTVIFLNQLRLKIGITYGNPETTTGGNALKFYASVRLD
IRRIQTLKRGTEEYGIRAKVKVAKNKVAPPFRIAEFDILFGKGISTLGCLLDLADETNVVTRKGAWYSYEGDNIGQGRDN
TITWLEQNPESKEIIEKLVKEKLTEGSEVSANSMRPLASAARQASSRPNLSQVSANG

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=767078 O5634_RS06580 WP_036904541.1 1224938..1226071(+) (recA) [Prochlorococcus marinus str. MIT 0915]
ATGTCAAACGAAGGTAAGCCACTCCAATCAACTGAATCTAAGAAAATAGACGCAAAATCTGGAGAGAAAGAAAAAGCATT
GAGCTTGGTTGTTGGGCAAATAGAACGCAATTTCGGAAAGGGTTCGATCATGCGTCTTGGCGACGCGTCAAAGATGCGGG
TAGAAACAATATCTACGGGTGCTTTAACTCTTGATTTAGCTCTTGGTGGAGGCTATCCCAAAGGACGTGTAATTGAAGTT
TATGGTCCCGAAAGTTCTGGAAAAACAACGCTGACATTACATGCAATAGCAGAGATTCAACGTAACGGCGGAGTTGCTGC
TTTTGTAGATGCAGAACATGCTCTTGACCCAGTCTATGCAGCTTCGCTTGGTGTTGATGTAGAAAATCTTCTCGTATCTC
AACCGGATACAGGAGAGATGGCATTGGAAATCGTTGACCAACTTATTAGATCTGCTGCAGTCGATCTAGTAGTTGTTGAT
TCAGTCGCTGCACTGACGCCCCGTTCAGAGATAGAAGGAGAAATGGGTGATCATTCAGTAGGTGCTCAAGCTCGTCTAAT
GAGTCAAGCAATGAGAAAAATTACTGGAAATATTGGAAAGTCTGGTTGCACAGTAATTTTCTTAAATCAATTACGTCTAA
AAATTGGTATTACATATGGAAATCCAGAAACAACAACTGGTGGAAACGCTCTTAAATTTTATGCCTCTGTAAGATTAGAT
ATTCGTCGTATTCAAACTTTAAAGAGAGGAACTGAAGAATATGGAATTCGTGCAAAAGTGAAAGTCGCAAAGAACAAAGT
TGCGCCTCCATTTCGAATAGCCGAATTTGATATTCTTTTTGGGAAAGGAATTAGTACTCTTGGTTGTCTTCTTGATTTAG
CAGATGAGACTAATGTTGTTACTCGTAAAGGAGCTTGGTATAGCTATGAAGGTGACAATATTGGTCAAGGGAGAGACAAC
ACCATTACTTGGCTTGAACAAAATCCTGAATCAAAAGAAATAATTGAAAAGTTAGTTAAAGAAAAATTAACTGAGGGCTC
AGAAGTAAGTGCTAATTCAATGAGACCATTAGCGTCAGCTGCTCGACAAGCTTCTTCACGACCAAACCTAAGCCAAGTTT
CAGCAAACGGTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(25-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A2C8Z1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

64.048

87.798

0.562
  recA Ralstonia pseudosolanacearum GMI1000

62.462

88.329

0.552
  recA Acinetobacter baumannii D1279779

64.286

85.411

0.549
  recA Neisseria gonorrhoeae MS11

59.71

91.512

0.546
  recA Neisseria gonorrhoeae MS11

59.71

91.512

0.546
  recA Neisseria gonorrhoeae strain FA1090

59.71

91.512

0.546
  recA Pseudomonas stutzeri DSM 10701

63.043

85.411

0.538
  recA Helicobacter pylori strain NCTC11637

59.763

89.655

0.536
  recA Helicobacter pylori 26695

59.763

89.655

0.536
  recA Streptococcus pneumoniae Rx1

55.866

94.96

0.531
  recA Streptococcus pneumoniae D39

55.866

94.96

0.531
  recA Streptococcus pneumoniae R6

55.866

94.96

0.531
  recA Streptococcus pneumoniae TIGR4

55.866

94.96

0.531
  recA Vibrio cholerae strain A1552

61.801

85.411

0.528
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.801

85.411

0.528
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.459

88.329

0.525
  recA Streptococcus mitis NCTC 12261

55.241

93.634

0.517
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.359

87.268

0.509
  recA Glaesserella parasuis strain SC1401

59.443

85.676

0.509
  recA Bacillus subtilis subsp. subtilis str. 168

59.502

85.146

0.507
  recA Streptococcus mitis SK321

57.402

87.798

0.504
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.193

89.39

0.493
  recA Streptococcus mutans UA159

56.615

86.207

0.488
  recA Lactococcus lactis subsp. cremoris KW2

54.167

89.125

0.483
  recA Streptococcus pyogenes NZ131

55.046

86.737

0.477
  recA Latilactobacillus sakei subsp. sakei 23K

58.689

80.902

0.475