Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   O5636_RS05930 Genome accession   NZ_CP114780
Coordinates   1065362..1066501 (+) Length   379 a.a.
NCBI ID   WP_269621898.1    Uniprot ID   -
Organism   Prochlorococcus marinus str. MIT 0918     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1060362..1071501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O5636_RS05895 - 1060741..1061049 (-) 309 WP_269621892.1 50S ribosomal protein L23 -
  O5636_RS05900 rplD 1061042..1061677 (-) 636 WP_269621893.1 50S ribosomal protein L4 -
  O5636_RS05905 rplC 1061674..1062333 (-) 660 WP_269621895.1 50S ribosomal protein L3 -
  O5636_RS05910 ndhN 1062736..1063197 (+) 462 WP_269621896.1 NAD(P)H-quinone oxidoreductase subunit N -
  O5636_RS05915 - 1063208..1064236 (+) 1029 WP_269623534.1 LdpA C-terminal domain-containing domain -
  O5636_RS05925 - 1064476..1065249 (+) 774 WP_269621897.1 HAD family hydrolase -
  O5636_RS05930 recA 1065362..1066501 (+) 1140 WP_269621898.1 recombinase RecA Machinery gene
  O5636_RS05935 - 1066525..1066770 (-) 246 WP_269621899.1 DUF2839 domain-containing protein -
  O5636_RS05940 - 1066841..1068271 (-) 1431 WP_269621900.1 helicase -
  O5636_RS05945 - 1068353..1069204 (+) 852 WP_269621901.1 prephenate/arogenate dehydrogenase -
  O5636_RS05950 crtD 1069209..1070720 (-) 1512 WP_269621902.1 C-3',4' desaturase CrtD -

Sequence

Protein


Download         Length: 379 a.a.        Molecular weight: 40516.21 Da        Isoelectric Point: 8.3983

>NTDB_id=767069 O5636_RS05930 WP_269621898.1 1065362..1066501(+) (recA) [Prochlorococcus marinus str. MIT 0918]
MSAEVKTTTSSGSDYRSNGTQSGERDKALSLVLGQIERNFGKGSIMRLGDASRMRVETISTGALTLDLALGGGYPKGRVV
EIYGPESSGKTTLTLHAIAEVQKRGGVAAFVDAEHALDPVYAASLGVDVENLLVSQPDTGEMALEIVDQLIRSTAVDLVV
VDSVAALTPRSEIEGEMGDHAVGSQARLMSQAMRKITGNIGKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVR
LDIRRIQTLKKGTEEYGIRAKVKVAKNKVAPPFRIAEFDILFGKGISTLGCLLDMAEETNIVTRKGAWYSYEGDNIGQGR
DNTIIWLEENTTAKETIEKLVRQKLTEGSEVSANSMRPLAAAARTAAATPVMKKVSNAA

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=767069 O5636_RS05930 WP_269621898.1 1065362..1066501(+) (recA) [Prochlorococcus marinus str. MIT 0918]
ATGTCAGCTGAAGTCAAAACAACCACATCTTCTGGTTCTGATTACCGTTCAAATGGTACGCAGTCCGGAGAAAGAGACAA
AGCATTAAGCCTCGTTCTTGGCCAAATAGAACGGAATTTTGGCAAAGGGTCAATCATGCGACTTGGAGATGCTTCTAGGA
TGCGTGTGGAGACCATCTCAACTGGCGCTTTAACGCTTGATCTAGCACTAGGCGGAGGATATCCAAAAGGAAGGGTTGTG
GAAATTTATGGGCCAGAAAGTTCAGGGAAAACAACACTCACTTTGCATGCTATAGCGGAAGTTCAAAAGCGAGGTGGTGT
AGCAGCTTTTGTAGATGCTGAACATGCTTTAGACCCTGTATATGCAGCTTCTTTAGGAGTTGATGTTGAAAATCTTTTAG
TCTCGCAACCCGACACAGGGGAGATGGCACTAGAAATTGTTGACCAATTAATCAGATCAACAGCTGTCGATTTAGTTGTT
GTAGATTCTGTGGCAGCACTAACCCCTAGATCAGAAATTGAAGGGGAAATGGGGGATCATGCAGTGGGAAGTCAAGCCAG
ATTGATGAGCCAGGCAATGCGAAAAATTACTGGGAATATAGGTAAATCCGGATGCACAGTAATTTTTCTCAACCAACTAC
GTTTAAAAATAGGTGTCACCTATGGGAACCCCGAAACAACAACAGGAGGTAATGCTCTCAAGTTTTATGCCTCTGTACGC
CTCGACATTCGCAGAATTCAAACACTTAAAAAAGGGACCGAAGAATATGGCATACGCGCTAAAGTGAAAGTTGCCAAAAA
CAAAGTTGCTCCTCCCTTCAGAATTGCTGAATTTGATATTTTGTTTGGAAAAGGAATTAGCACATTAGGATGTTTACTTG
ACATGGCAGAAGAAACCAATATTGTCACTCGAAAAGGTGCTTGGTATAGCTACGAAGGTGATAACATAGGCCAAGGGCGA
GACAATACAATTATTTGGCTTGAAGAAAATACAACCGCAAAAGAAACCATAGAGAAATTAGTCCGTCAAAAACTAACAGA
AGGTTCTGAAGTTAGCGCTAATTCCATGCGACCCCTTGCTGCCGCCGCTCGTACAGCAGCAGCAACACCAGTGATGAAAA
AGGTTTCTAACGCTGCCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(27-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

65.257

87.335

0.57
  recA Pseudomonas stutzeri DSM 10701

60

93.668

0.562
  recA Acinetobacter baumannii D1279779

65.217

84.96

0.554
  recA Neisseria gonorrhoeae MS11

60

91.029

0.546
  recA Neisseria gonorrhoeae strain FA1090

60

91.029

0.546
  recA Neisseria gonorrhoeae MS11

60

91.029

0.546
  recA Ralstonia pseudosolanacearum GMI1000

64.952

82.058

0.533
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

57.925

91.557

0.53
  recA Helicobacter pylori 26695

59.467

89.182

0.53
  recA Helicobacter pylori strain NCTC11637

59.467

89.182

0.53
  recA Vibrio cholerae strain A1552

62.112

84.96

0.528
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.112

84.96

0.528
  recA Streptococcus pneumoniae TIGR4

58.754

88.918

0.522
  recA Streptococcus pneumoniae D39

58.754

88.918

0.522
  recA Streptococcus pneumoniae R6

58.754

88.918

0.522
  recA Streptococcus pneumoniae Rx1

58.754

88.918

0.522
  recA Glaesserella parasuis strain SC1401

60.681

85.224

0.517
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.748

84.697

0.515
  recA Streptococcus mitis SK321

56.522

91.029

0.515
  recA Streptococcus mitis NCTC 12261

57.567

88.918

0.512
  recA Bacillus subtilis subsp. subtilis str. 168

60.436

84.697

0.512
  recA Latilactobacillus sakei subsp. sakei 23K

59.752

85.224

0.509
  recA Lactococcus lactis subsp. cremoris KW2

57.143

88.654

0.507
  recA Streptococcus mutans UA159

58.154

85.752

0.499
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.522

88.391

0.491
  recA Streptococcus pyogenes NZ131

56.575

86.28

0.488