Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   O5635_RS05645 Genome accession   NZ_CP114779
Coordinates   1003006..1004145 (+) Length   379 a.a.
NCBI ID   WP_036900678.1    Uniprot ID   -
Organism   Prochlorococcus marinus str. MIT 0919     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 998006..1009145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O5635_RS05605 rpsS 998309..998584 (-) 276 WP_036900658.1 30S ribosomal protein S19 -
  O5635_RS05610 rplB 998626..999489 (-) 864 WP_036900661.1 50S ribosomal protein L2 -
  O5635_RS05615 - 999503..999805 (-) 303 WP_036900664.1 50S ribosomal protein L23 -
  O5635_RS05620 rplD 999798..1000433 (-) 636 WP_036900667.1 50S ribosomal protein L4 -
  O5635_RS05625 rplC 1000433..1001092 (-) 660 WP_036900670.1 50S ribosomal protein L3 -
  O5635_RS05630 ndhN 1001476..1001937 (+) 462 WP_036900672.1 NAD(P)H-quinone oxidoreductase subunit N -
  O5635_RS05640 - 1002120..1002893 (+) 774 WP_269607183.1 HAD family hydrolase -
  O5635_RS05645 recA 1003006..1004145 (+) 1140 WP_036900678.1 recombinase RecA Machinery gene
  O5635_RS05650 - 1004196..1004432 (-) 237 WP_036900681.1 DUF2839 domain-containing protein -
  O5635_RS05655 - 1004467..1005918 (-) 1452 WP_036900683.1 helicase -
  O5635_RS05660 - 1006002..1006871 (+) 870 WP_036900684.1 prephenate/arogenate dehydrogenase -
  O5635_RS05665 crtD 1006880..1008391 (-) 1512 WP_036900685.1 C-3',4' desaturase CrtD -

Sequence

Protein


Download         Length: 379 a.a.        Molecular weight: 40596.24 Da        Isoelectric Point: 8.8495

>NTDB_id=767061 O5635_RS05645 WP_036900678.1 1003006..1004145(+) (recA) [Prochlorococcus marinus str. MIT 0919]
MSAVPKTNPSANTESRQSESRSEGRDKALNLVLGQIERNFGKGSIMRLGDASRMRVETISTGALTLDLALGGGYPKGRVV
EVYGPESSGKTTLTLHAIAEVQRNGGVAAFVDAEHALDPVYAASLGVDVENLLVSQPDTGEMALEIVDQLIRSAAVDLVV
VDSVAALTPRSEIEGEMGDHVVGSQARLMSQAMRKITGNIGKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVR
LDIRRIQTLKRGTEEYGIRAKVKVAKNKVAPPFRIAEFDILFGRGISTIGCLLDLAEETDVVTRKGAWYSYEGDNIGQGR
DNTIIWLEQNTAAKEKIEKLVKQKLTEGSEVSANSMKPLAAAARTGTTQPSMSKATRAA

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=767061 O5635_RS05645 WP_036900678.1 1003006..1004145(+) (recA) [Prochlorococcus marinus str. MIT 0919]
ATGTCCGCCGTCCCCAAAACAAATCCATCCGCCAACACAGAATCTCGCCAAAGTGAGTCGCGATCAGAGGGAAGAGATAA
AGCCCTCAATCTTGTCTTAGGTCAAATAGAAAGGAATTTTGGGAAAGGCTCAATCATGAGGCTGGGTGATGCCTCCAGAA
TGCGGGTGGAAACAATTTCGACTGGGGCTCTCACACTTGATCTTGCACTGGGAGGTGGATATCCCAAAGGAAGAGTGGTA
GAAGTGTATGGACCAGAAAGCTCAGGCAAAACAACTCTGACATTACATGCCATCGCAGAAGTTCAACGAAATGGTGGAGT
AGCAGCCTTTGTTGATGCAGAACATGCCTTGGATCCTGTTTATGCTGCGTCTTTAGGTGTTGATGTGGAAAATCTCTTGG
TGTCACAGCCAGACACTGGTGAGATGGCATTGGAGATTGTCGACCAATTAATCAGATCTGCTGCCGTTGATCTGGTTGTT
GTGGATTCAGTAGCTGCACTAACACCTCGATCGGAAATAGAAGGTGAAATGGGAGACCATGTAGTAGGGAGTCAAGCAAG
ATTAATGAGCCAGGCCATGAGAAAAATCACTGGCAATATTGGAAAATCTGGCTGCACAGTAATCTTCCTGAATCAACTCA
GACTAAAAATAGGAGTTACCTATGGAAATCCTGAAACAACTACAGGTGGTAATGCACTTAAATTCTATGCGTCAGTAAGG
CTAGATATTCGTCGTATTCAAACACTTAAAAGAGGGACAGAAGAATATGGGATCAGAGCAAAAGTCAAAGTAGCTAAAAA
TAAAGTCGCCCCTCCTTTTCGTATTGCTGAATTTGATATCTTATTTGGTCGAGGTATTAGCACCATTGGATGTCTCTTAG
ACTTGGCAGAGGAGACTGATGTTGTCACACGTAAGGGTGCTTGGTACAGCTACGAAGGAGACAATATAGGCCAAGGGAGG
GATAACACAATTATATGGCTTGAACAAAATACAGCAGCTAAAGAAAAGATCGAGAAGCTAGTAAAACAAAAATTAACGGA
AGGGTCAGAAGTCAGCGCCAATTCTATGAAACCTCTTGCTGCTGCAGCTCGTACAGGCACTACTCAACCTTCCATGAGTA
AGGCTACAAGAGCTGCGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(27-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

63.063

87.863

0.554
  recA Acinetobacter baumannii D1279779

63.58

85.488

0.544
  recA Pseudomonas stutzeri DSM 10701

62.963

85.488

0.538
  recA Neisseria gonorrhoeae MS11

58.551

91.029

0.533
  recA Neisseria gonorrhoeae strain FA1090

58.551

91.029

0.533
  recA Neisseria gonorrhoeae MS11

58.551

91.029

0.533
  recA Helicobacter pylori strain NCTC11637

59.118

89.71

0.53
  recA Helicobacter pylori 26695

59.118

89.71

0.53
  recA Glaesserella parasuis strain SC1401

58.651

89.974

0.528
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.42

85.488

0.525
  recA Vibrio cholerae strain A1552

61.42

85.488

0.525
  recA Ralstonia pseudosolanacearum GMI1000

63.987

82.058

0.525
  recA Streptococcus mitis NCTC 12261

56.105

90.765

0.509
  recA Bacillus subtilis subsp. subtilis str. 168

62.866

81.003

0.509
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

57.44

88.654

0.509
  recA Streptococcus pneumoniae R6

57.44

88.654

0.509
  recA Streptococcus pneumoniae TIGR4

57.44

88.654

0.509
  recA Streptococcus pneumoniae D39

57.44

88.654

0.509
  recA Streptococcus pneumoniae Rx1

57.44

88.654

0.509
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.896

86.016

0.507
  recA Lactococcus lactis subsp. cremoris KW2

53.482

94.723

0.507
  recA Latilactobacillus sakei subsp. sakei 23K

58.696

84.96

0.499
  recA Streptococcus mitis SK321

55.102

90.501

0.499
  recA Streptococcus mutans UA159

56.481

85.488

0.483
  recA Streptococcus pyogenes NZ131

55.521

86.016

0.478
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.74

86.28

0.472