Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   O5633_RS07370 Genome accession   NZ_CP114778
Coordinates   1229599..1230732 (+) Length   377 a.a.
NCBI ID   WP_269608986.1    Uniprot ID   -
Organism   Prochlorococcus marinus str. MIT 1013     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1224599..1235732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O5633_RS07335 - 1224973..1225284 (-) 312 WP_269608980.1 50S ribosomal protein L23 -
  O5633_RS07340 rplD 1225277..1225912 (-) 636 WP_269608981.1 50S ribosomal protein L4 -
  O5633_RS07345 rplC 1225915..1226571 (-) 657 WP_269608982.1 50S ribosomal protein L3 -
  O5633_RS07350 - 1226942..1227406 (+) 465 WP_269608983.1 NAD(P)H-quinone oxidoreductase subunit N -
  O5633_RS07355 - 1227419..1228441 (+) 1023 WP_269608984.1 LdpA C-terminal domain-containing domain -
  O5633_RS07365 - 1228710..1229486 (+) 777 WP_269608985.1 HAD family hydrolase -
  O5633_RS07370 recA 1229599..1230732 (+) 1134 WP_269608986.1 recombinase RecA Machinery gene
  O5633_RS07375 - 1230753..1230992 (-) 240 WP_269608987.1 DUF2839 domain-containing protein -
  O5633_RS07380 - 1231031..1232479 (-) 1449 WP_269608988.1 helicase -
  O5633_RS07385 - 1232553..1233428 (+) 876 WP_269608989.1 prephenate/arogenate dehydrogenase -
  O5633_RS07390 crtD 1233421..1234938 (-) 1518 WP_269608990.1 C-3',4' desaturase CrtD -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 40362.05 Da        Isoelectric Point: 7.8530

>NTDB_id=767053 O5633_RS07370 WP_269608986.1 1229599..1230732(+) (recA) [Prochlorococcus marinus str. MIT 1013]
MSNEGKSLQSTEPKKIVAKSGEKEKALSLVVGQIERNFGKGSIMRLGDASKMRVETISTGALTLDLALGGGYPKGRVIEV
YGPESSGKTTLTLHAIAEIQRNGGVAAFVDAEHALDPVYAASLGVDVENLLVSQPDTGEMALEIVDQLIRSAAVDLVVVD
SVAALTPRSEIEGEMGDHSVGAQARLMSQAMRKITGNIGKSGCTVIFLNQLRLKIGITYGNPETTTGGNALKFYASVRLD
IRRIQTLKRGTEEYGIRAKVKVAKNKVAPPFRIAEFDILFGKGISTLGCLLDLADETNVVTRKGAWYSYEGDNIGQGRDN
TITWLEQNPESKEIIEKLVKEKLTEGSEVSANSMRPLAAAARQASSRPNLSQVSANG

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=767053 O5633_RS07370 WP_269608986.1 1229599..1230732(+) (recA) [Prochlorococcus marinus str. MIT 1013]
ATGTCAAACGAAGGTAAGTCACTCCAATCAACTGAACCTAAGAAAATAGTCGCAAAATCTGGAGAAAAAGAAAAAGCATT
GAGCTTAGTGGTTGGGCAAATAGAACGCAATTTCGGGAAGGGTTCGATCATGCGCCTTGGGGACGCGTCAAAGATGCGGG
TAGAAACAATATCTACGGGTGCCTTAACTCTTGATTTAGCTCTTGGTGGCGGCTATCCCAAAGGACGTGTAATTGAAGTT
TATGGTCCCGAAAGTTCTGGGAAGACAACGCTGACATTACATGCGATAGCTGAGATTCAACGTAATGGCGGAGTTGCTGC
ATTTGTAGATGCAGAACATGCTCTTGACCCAGTCTATGCAGCTTCTCTTGGTGTTGATGTAGAGAATCTTCTCGTATCTC
AGCCAGATACAGGCGAGATGGCCTTGGAAATCGTTGACCAACTTATTAGATCTGCTGCAGTCGATCTAGTTGTTGTTGAT
TCAGTCGCTGCACTTACGCCTCGTTCAGAGATAGAAGGAGAAATGGGTGATCATTCAGTAGGTGCTCAAGCTCGTCTAAT
GAGTCAAGCAATGAGAAAAATCACTGGAAACATTGGCAAGTCTGGTTGCACAGTAATTTTCTTAAATCAATTACGTCTAA
AAATTGGTATTACATATGGGAATCCAGAGACAACAACTGGTGGAAATGCTCTTAAATTTTATGCCTCAGTAAGATTAGAT
ATTCGTCGTATTCAAACTTTAAAGAGAGGAACTGAAGAATATGGAATTCGTGCAAAAGTGAAAGTCGCAAAAAACAAAGT
TGCACCTCCATTCCGAATAGCCGAGTTTGATATTCTTTTTGGAAAAGGAATTAGTACTCTTGGTTGTCTTCTTGATTTAG
CAGATGAGACTAATGTTGTTACTCGTAAAGGAGCGTGGTATAGCTATGAAGGTGACAATATTGGGCAAGGGAGAGATAAT
ACCATTACTTGGCTTGAACAAAATCCTGAATCAAAAGAAATAATTGAAAAATTAGTCAAAGAAAAATTAACTGAAGGCTC
AGAAGTAAGTGCTAATTCAATGAGACCGTTAGCGGCAGCTGCTCGACAGGCTTCATCACGACCAAACCTAAGCCAAGTTT
CAGCGAACGGTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(25-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

64.048

87.798

0.562
  recA Ralstonia pseudosolanacearum GMI1000

62.84

87.798

0.552
  recA Acinetobacter baumannii D1279779

64.286

85.411

0.549
  recA Neisseria gonorrhoeae MS11

59.71

91.512

0.546
  recA Neisseria gonorrhoeae MS11

59.71

91.512

0.546
  recA Neisseria gonorrhoeae strain FA1090

59.71

91.512

0.546
  recA Pseudomonas stutzeri DSM 10701

63.043

85.411

0.538
  recA Helicobacter pylori strain NCTC11637

59.763

89.655

0.536
  recA Helicobacter pylori 26695

59.763

89.655

0.536
  recA Streptococcus pneumoniae Rx1

56.374

93.634

0.528
  recA Streptococcus pneumoniae D39

56.374

93.634

0.528
  recA Streptococcus pneumoniae R6

56.374

93.634

0.528
  recA Streptococcus pneumoniae TIGR4

56.374

93.634

0.528
  recA Vibrio cholerae strain A1552

61.801

85.411

0.528
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.801

85.411

0.528
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.459

88.329

0.525
  recA Glaesserella parasuis strain SC1401

55.65

93.899

0.523
  recA Streptococcus mitis NCTC 12261

55.114

93.369

0.515
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.359

87.268

0.509
  recA Bacillus subtilis subsp. subtilis str. 168

59.502

85.146

0.507
  recA Streptococcus mutans UA159

55.556

90.716

0.504
  recA Streptococcus mitis SK321

57.273

87.533

0.501
  recA Streptococcus pyogenes NZ131

54.07

91.247

0.493
  recA Lactococcus lactis subsp. cremoris KW2

54.167

89.125

0.483
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.488

87.003

0.483
  recA Latilactobacillus sakei subsp. sakei 23K

58.689

80.902

0.475