Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   O5639_RS06495 Genome accession   NZ_CP114777
Coordinates   1120159..1121292 (+) Length   377 a.a.
NCBI ID   WP_269623748.1    Uniprot ID   -
Organism   Prochlorococcus marinus str. MIT 1214     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1115159..1126292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O5639_RS06460 - 1115534..1115845 (-) 312 WP_038654359.1 50S ribosomal protein L23 -
  O5639_RS06465 rplD 1115838..1116473 (-) 636 WP_269625526.1 50S ribosomal protein L4 -
  O5639_RS06470 rplC 1116473..1117129 (-) 657 WP_269623744.1 50S ribosomal protein L3 -
  O5639_RS06475 - 1117500..1117964 (+) 465 WP_269623745.1 NAD(P)H-quinone oxidoreductase subunit N -
  O5639_RS06480 - 1117977..1118999 (+) 1023 WP_269623746.1 LdpA C-terminal domain-containing domain -
  O5639_RS06490 - 1119267..1120046 (+) 780 WP_269623747.1 HAD family hydrolase -
  O5639_RS06495 recA 1120159..1121292 (+) 1134 WP_269623748.1 recombinase RecA Machinery gene
  O5639_RS06500 - 1121313..1121552 (-) 240 WP_269623749.1 DUF2839 domain-containing protein -
  O5639_RS06505 - 1121591..1123039 (-) 1449 WP_269623750.1 helicase -
  O5639_RS06510 - 1123113..1123973 (+) 861 WP_269623751.1 prephenate/arogenate dehydrogenase -
  O5639_RS06515 crtD 1123981..1125498 (-) 1518 WP_269623752.1 C-3',4' desaturase CrtD -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 40406.06 Da        Isoelectric Point: 7.8530

>NTDB_id=767045 O5639_RS06495 WP_269623748.1 1120159..1121292(+) (recA) [Prochlorococcus marinus str. MIT 1214]
MSNEGKSLQSTEPKRIDAKSGEKEKALSLVVGQIERNFGKGSIMRLGDASKMRVETISTGALTLDLALGGGYPKGRVIEV
YGPESSGKTTLTLHAIAEIQRNGGVAAFVDAEHALDPVYAASLGVDVENLLVSQPDTGEMALEIVDQLIRSAAVDLVVVD
SVAALTPRSEIEGEMGDHSVGAQARLMSQAMRKITGNIGKSGCTVIFLNQLRLKIGITYGNPETTTGGNALKFYASVRLD
IRRIQTLKRGTEEYGIRAKVKVAKNKVAPPFRIAEFDILFGKGISTLGCLLDLADETNVVTRKGAWYSYEGDNIGQGRDN
TITWLEQNPESKEIIEKLVKEKLTEGSEVSANSMRPLAAAARQASSRPNLSKVSANG

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=767045 O5639_RS06495 WP_269623748.1 1120159..1121292(+) (recA) [Prochlorococcus marinus str. MIT 1214]
ATGTCAAACGAAGGTAAGTCACTCCAATCAACTGAACCGAAGAGAATAGACGCAAAATCTGGAGAAAAAGAAAAAGCATT
GAGCTTAGTGGTTGGGCAAATAGAACGCAATTTCGGAAAGGGTTCGATCATGCGTCTTGGGGACGCGTCAAAGATGCGGG
TAGAAACAATATCTACGGGTGCTTTAACTCTTGATTTAGCTCTTGGTGGCGGCTATCCCAAAGGACGTGTAATTGAAGTT
TATGGTCCCGAAAGCTCTGGGAAAACAACGCTGACATTACATGCGATAGCTGAGATTCAACGTAACGGCGGAGTTGCTGC
ATTTGTAGATGCAGAACATGCTCTTGACCCAGTCTATGCAGCTTCTCTTGGTGTTGACGTAGAGAATCTTCTCGTATCTC
AACCTGATACAGGCGAGATGGCATTGGAAATCGTGGACCAACTTATTAGATCTGCTGCAGTCGATCTAGTTGTTGTTGAT
TCAGTCGCTGCACTTACGCCCCGTTCAGAGATAGAAGGAGAAATGGGTGATCATTCAGTAGGCGCTCAAGCTCGTCTAAT
GAGTCAAGCAATGAGAAAAATTACTGGAAATATTGGCAAGTCTGGTTGCACAGTGATTTTCTTAAATCAATTACGTCTAA
AAATTGGTATTACATATGGGAATCCAGAAACAACCACTGGTGGAAATGCTCTTAAATTTTATGCGTCTGTAAGGTTAGAT
ATTCGTCGTATTCAAACGTTAAAGAGAGGAACTGAAGAATATGGAATTCGCGCAAAAGTGAAAGTCGCAAAAAACAAAGT
TGCACCTCCATTCCGAATAGCCGAATTTGATATTCTTTTTGGAAAAGGAATTAGTACTCTCGGTTGTCTTCTTGATTTGG
CAGATGAGACTAATGTCGTTACTCGTAAAGGAGCTTGGTATAGCTATGAAGGTGACAATATTGGGCAAGGGAGAGACAAT
ACCATTACCTGGCTTGAACAAAATCCTGAATCAAAAGAAATAATTGAAAAGTTAGTTAAAGAAAAATTAACTGAAGGCTC
AGAAGTAAGTGCTAATTCAATGAGACCATTAGCGGCAGCCGCTCGACAGGCTTCATCACGACCAAACCTAAGCAAAGTTT
CAGCGAACGGTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(25-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

64.048

87.798

0.562
  recA Acinetobacter baumannii D1279779

64.286

85.411

0.549
  recA Neisseria gonorrhoeae MS11

59.71

91.512

0.546
  recA Neisseria gonorrhoeae strain FA1090

59.71

91.512

0.546
  recA Neisseria gonorrhoeae MS11

59.71

91.512

0.546
  recA Pseudomonas stutzeri DSM 10701

63.043

85.411

0.538
  recA Helicobacter pylori 26695

59.763

89.655

0.536
  recA Helicobacter pylori strain NCTC11637

59.763

89.655

0.536
  recA Glaesserella parasuis strain SC1401

53.887

98.939

0.533
  recA Ralstonia pseudosolanacearum GMI1000

63.987

82.493

0.528
  recA Vibrio cholerae strain A1552

61.801

85.411

0.528
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.801

85.411

0.528
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.459

88.329

0.525
  recA Streptococcus pneumoniae TIGR4

55.524

93.634

0.52
  recA Streptococcus pneumoniae Rx1

55.524

93.634

0.52
  recA Streptococcus pneumoniae D39

55.524

93.634

0.52
  recA Streptococcus pneumoniae R6

55.524

93.634

0.52
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.359

87.268

0.509
  recA Streptococcus mitis NCTC 12261

54.545

93.369

0.509
  recA Bacillus subtilis subsp. subtilis str. 168

59.502

85.146

0.507
  recA Streptococcus mitis SK321

56.667

87.533

0.496
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.556

88.329

0.491
  recA Streptococcus mutans UA159

56.615

86.207

0.488
  recA Lactococcus lactis subsp. cremoris KW2

54.167

89.125

0.483
  recA Streptococcus pyogenes NZ131

55.046

86.737

0.477
  recA Latilactobacillus sakei subsp. sakei 23K

58.689

80.902

0.475