Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CF557_RS11160 Genome accession   NZ_CP114281
Coordinates   2352992..2354059 (+) Length   355 a.a.
NCBI ID   WP_039094684.1    Uniprot ID   A0A0A2ZR93
Organism   Gallibacterium anatis strain ESV200     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2347992..2359059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CF557_RS11145 (CF557_11145) - 2348758..2349147 (-) 390 WP_018345719.1 RidA family protein -
  CF557_RS11150 (CF557_11150) argF 2349169..2350170 (-) 1002 WP_094872004.1 ornithine carbamoyltransferase -
  CF557_RS11155 (CF557_11155) mutS 2350198..2352783 (-) 2586 WP_094872002.1 DNA mismatch repair protein MutS -
  CF557_RS11160 (CF557_11160) recA 2352992..2354059 (+) 1068 WP_039094684.1 recombinase RecA Machinery gene
  CF557_RS11165 (CF557_11165) recX 2354217..2354660 (+) 444 WP_094871999.1 recombination regulator RecX -
  CF557_RS11170 (CF557_11170) djlA 2354744..2355616 (+) 873 WP_094871996.1 co-chaperone DjlA -
  CF557_RS11175 (CF557_11175) dusC 2355623..2356567 (+) 945 WP_039081246.1 tRNA dihydrouridine(16) synthase DusC -
  CF557_RS11180 (CF557_11180) yjjG 2356557..2357234 (+) 678 WP_013745828.1 pyrimidine 5'-nucleotidase -
  CF557_RS12115 - 2357316..2357657 (+) 342 Protein_2161 ACT domain-containing protein -
  CF557_RS11185 (CF557_11185) - 2358000..2358893 (+) 894 WP_371128160.1 sigma 54-interacting transcriptional regulator -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38321.63 Da        Isoelectric Point: 4.7502

>NTDB_id=765367 CF557_RS11160 WP_039094684.1 2352992..2354059(+) (recA) [Gallibacterium anatis strain ESV200]
MTTNNEDKERALAAALGQIEKQFGKGSIMRLGDTQTLDVEAVSTGSLALDVALGIGGLPMGRIVEIFGPESSGKTTLTLS
VIAQAQKEGKTCAFIDAEHALDPIYASKLGVDVQSLLVSQPDNGEQALEICDALVRSGAVDVIIIDSVAALTPKAEIEGD
MGDSHMGLQARLMSQALRKLTGHIKTANCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSITDGDEVI
GNDTRVKVVKNKVAAPFRQAEFQILYGEGISKNGELIELGVKHKLLNKSGAWYSYNDEKIGQGRTNAMKWLAEHPEVAAE
LERKLREELLSNPEQLLVADDTEKQPEDDALNFGE

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=765367 CF557_RS11160 WP_039094684.1 2352992..2354059(+) (recA) [Gallibacterium anatis strain ESV200]
ATGACAACAAACAATGAAGATAAAGAAAGAGCATTGGCAGCAGCATTAGGGCAAATTGAAAAACAATTCGGTAAAGGTTC
AATTATGCGCCTTGGTGATACACAAACATTGGATGTGGAAGCGGTTTCTACCGGTTCATTGGCGTTGGATGTGGCGTTAG
GTATCGGTGGTTTGCCAATGGGGCGCATAGTTGAGATTTTTGGGCCTGAATCTTCCGGTAAAACCACATTAACTTTATCT
GTGATTGCGCAAGCACAAAAAGAGGGTAAAACCTGTGCCTTTATTGATGCGGAACACGCATTGGATCCTATTTATGCCTC
TAAATTAGGGGTTGATGTACAATCACTTTTAGTTTCGCAACCGGATAACGGCGAACAGGCGTTGGAAATTTGTGATGCTT
TAGTACGTTCCGGAGCGGTGGATGTCATTATTATTGACTCTGTAGCAGCATTAACACCGAAAGCGGAAATTGAAGGTGAT
ATGGGTGATTCCCATATGGGGTTACAGGCTCGTTTAATGTCTCAAGCATTGCGTAAACTTACCGGTCATATCAAAACAGC
AAACTGTTTAGTGGTATTTATTAACCAAATTCGTATGAAAATTGGTGTTATGTTTGGTAATCCTGAAACAACAACCGGTG
GTAATGCCTTAAAATTCTATGCTTCAGTGCGTTTAGATATTCGCCGCACAGGTTCAATTACTGATGGCGATGAGGTAATT
GGTAATGATACTAGAGTTAAAGTAGTGAAAAATAAAGTAGCAGCACCATTTAGACAAGCTGAATTCCAAATTCTCTACGG
AGAAGGTATTTCTAAAAACGGTGAGTTAATCGAATTGGGTGTAAAACATAAATTGCTTAATAAATCAGGCGCTTGGTATT
CCTACAATGATGAAAAGATTGGTCAAGGTCGTACCAATGCAATGAAGTGGCTTGCCGAACATCCGGAGGTGGCTGCCGAG
TTGGAACGTAAATTACGTGAAGAGTTGCTTTCCAATCCGGAGCAGTTATTAGTTGCGGATGATACAGAAAAACAACCGGA
AGATGACGCATTAAATTTCGGTGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(10-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A2ZR93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74

98.592

0.73
  recA Vibrio cholerae strain A1552

74

98.592

0.73
  recA Glaesserella parasuis strain SC1401

74

98.592

0.73
  recA Pseudomonas stutzeri DSM 10701

73.529

95.775

0.704
  recA Neisseria gonorrhoeae MS11

73.375

90.986

0.668
  recA Neisseria gonorrhoeae MS11

73.375

90.986

0.668
  recA Neisseria gonorrhoeae strain FA1090

73.375

90.986

0.668
  recA Acinetobacter baylyi ADP1

68.895

96.901

0.668
  recA Acinetobacter baumannii D1279779

68.222

96.62

0.659
  recA Ralstonia pseudosolanacearum GMI1000

73.968

88.732

0.656
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.072

94.085

0.603
  recA Helicobacter pylori 26695

61.834

95.211

0.589
  recA Helicobacter pylori strain NCTC11637

61.834

95.211

0.589
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.883

91.831

0.577
  recA Streptococcus pneumoniae D39

58.96

97.465

0.575
  recA Streptococcus pneumoniae TIGR4

58.96

97.465

0.575
  recA Streptococcus pneumoniae Rx1

58.96

97.465

0.575
  recA Streptococcus pneumoniae R6

58.96

97.465

0.575
  recA Bacillus subtilis subsp. subtilis str. 168

63.551

90.423

0.575
  recA Streptococcus mitis SK321

61.111

91.268

0.558
  recA Latilactobacillus sakei subsp. sakei 23K

61.682

90.423

0.558
  recA Streptococcus mitis NCTC 12261

60.494

91.268

0.552
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.394

92.958

0.552
  recA Streptococcus pyogenes NZ131

59.692

91.549

0.546
  recA Lactococcus lactis subsp. cremoris KW2

59.568

91.268

0.544
  recA Streptococcus mutans UA159

58.769

91.549

0.538