Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   O1449_RS09270 Genome accession   NZ_CP114264
Coordinates   1964758..1965804 (+) Length   348 a.a.
NCBI ID   WP_269230082.1    Uniprot ID   A0A9E9L1J7
Organism   Acinetobacter sp. TR3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1959758..1970804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1449_RS09235 (O1449_09250) rraA 1960041..1960553 (-) 513 WP_269238134.1 ribonuclease E activity regulator RraA -
  O1449_RS09240 (O1449_09255) - 1960567..1961232 (-) 666 WP_269238135.1 NAD(P)H-binding protein -
  O1449_RS09245 (O1449_09260) rpsT 1961445..1961711 (+) 267 WP_004639414.1 30S ribosomal protein S20 -
  O1449_RS09250 (O1449_09265) - 1961830..1962561 (-) 732 WP_004661479.1 histidine phosphatase family protein -
  O1449_RS09255 (O1449_09270) - 1962613..1963470 (-) 858 WP_269238136.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  O1449_RS09260 (O1449_09275) - 1963482..1964186 (+) 705 WP_269230084.1 HAD-IA family hydrolase -
  O1449_RS09265 (O1449_09280) - 1964170..1964598 (+) 429 WP_269238137.1 S4 domain-containing protein -
  O1449_RS09270 (O1449_09285) recA 1964758..1965804 (+) 1047 WP_269230082.1 recombinase RecA Machinery gene
  O1449_RS09275 (O1449_09290) - 1965851..1966333 (+) 483 WP_269238138.1 regulatory protein RecX -
  O1449_RS09285 (O1449_09300) - 1966760..1967599 (+) 840 WP_269230080.1 YbgF trimerization domain-containing protein -
  O1449_RS09290 (O1449_09305) - 1967668..1969539 (-) 1872 WP_269238139.1 SurA N-terminal domain-containing protein -
  O1449_RS09295 (O1449_09310) - 1969668..1969940 (-) 273 WP_004661469.1 HU family DNA-binding protein -
  O1449_RS09300 (O1449_09315) - 1970107..1970562 (-) 456 WP_004661467.1 phasin family protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37930.24 Da        Isoelectric Point: 5.0431

>NTDB_id=765297 O1449_RS09270 WP_269230082.1 1964758..1965804(+) (recA) [Acinetobacter sp. TR3]
MDDNKSKALQAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIIEIYGPESSGKTTMTLQAIA
QCQKNGGTCAFIDAEHALDPEYARKLGVDIDNLLVSQPDHGEQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEITGNE
TRVKVVKNKMAPPFKEAVFQIMYGKGTNQLGELVDLAVQQDIVQKAGAWYSYQGNKIGQGKNNVIRHFEENTAMAQEIEK
VIREQLLTKNNKEAAQTEDEDEPDFLES

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=765297 O1449_RS09270 WP_269230082.1 1964758..1965804(+) (recA) [Acinetobacter sp. TR3]
ATGGATGATAATAAAAGCAAGGCGTTACAAGCAGCCTTAAGCCAAATTGAAAAGCAGTTTGGTAAAAATACCGTGATGCG
CTTAGGTGATAATACTGTACAAGCTGTTGAAGCGGTTTCTACAGGTTCTTTAACTCTCGATATCGCGTTAGGGATTGGCG
GATTACCTAAAGGTCGTATTATCGAAATTTATGGTCCTGAATCTTCAGGTAAAACTACTATGACATTACAAGCGATTGCT
CAATGTCAAAAAAATGGCGGTACCTGTGCATTTATCGATGCAGAACATGCATTAGATCCAGAATATGCACGTAAGCTTGG
CGTAGATATTGATAATCTATTGGTTTCACAACCTGACCACGGTGAGCAAGCGCTCGAAATCGCCGATATGTTGGTGCGTT
CTGGTGCAATCGATTTAATCGTTGTCGACTCTGTAGCAGCATTAACCCCTAAAGCCGAAATTGAAGGCGAAATGGGTGAC
TCACACATGGGCTTACAAGCACGCTTAATGAGTCAGGCCCTACGTAAAATTACAGGTAATGCGAAACGCTCTAACTGTAT
GGTGATCTTCATTAACCAAATCCGTATGAAGATTGGTGTGATGTTTGGTAGCCCAGAAACCACTACAGGTGGTAATGCAC
TTAAATTCTACGCTTCTGTACGCTTAGACATCCGTCGTATTGGTCAAGTGAAAGAAGGTGACGAGATCACAGGTAACGAA
ACGCGTGTTAAAGTTGTGAAAAACAAAATGGCGCCTCCGTTCAAAGAAGCTGTGTTCCAAATCATGTATGGCAAAGGCAC
TAATCAGTTAGGCGAATTGGTTGATCTTGCCGTTCAACAAGACATCGTACAAAAAGCGGGTGCATGGTATTCATATCAAG
GCAATAAAATTGGCCAAGGTAAAAACAATGTGATTCGTCATTTTGAAGAAAATACAGCAATGGCTCAAGAAATTGAAAAG
GTTATTCGTGAACAACTTCTTACTAAGAACAACAAAGAAGCAGCTCAAACCGAAGATGAAGATGAACCAGATTTTTTAGA
AAGCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

92.775

99.425

0.922
  recA Acinetobacter baylyi ADP1

91.691

100

0.92
  recA Pseudomonas stutzeri DSM 10701

72.046

99.713

0.718
  recA Vibrio cholerae strain A1552

73.112

95.115

0.695
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.112

95.115

0.695
  recA Glaesserella parasuis strain SC1401

67.435

99.713

0.672
  recA Neisseria gonorrhoeae MS11

68.827

93.103

0.641
  recA Neisseria gonorrhoeae MS11

68.827

93.103

0.641
  recA Neisseria gonorrhoeae strain FA1090

68.827

93.103

0.641
  recA Ralstonia pseudosolanacearum GMI1000

71.383

89.368

0.638
  recA Helicobacter pylori strain NCTC11637

63.343

97.989

0.621
  recA Helicobacter pylori 26695

63.05

97.989

0.618
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.473

95.977

0.609
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.526

93.966

0.606
  recA Streptococcus mutans UA159

58.908

100

0.589
  recA Streptococcus pneumoniae R6

59.302

98.851

0.586
  recA Streptococcus pneumoniae Rx1

59.302

98.851

0.586
  recA Streptococcus pneumoniae D39

59.302

98.851

0.586
  recA Streptococcus pneumoniae TIGR4

59.302

98.851

0.586
  recA Bacillus subtilis subsp. subtilis str. 168

61.89

94.253

0.583
  recA Streptococcus mitis SK321

59.238

97.989

0.58
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.127

90.517

0.58
  recA Streptococcus mitis NCTC 12261

58.944

97.989

0.578
  recA Streptococcus pyogenes NZ131

61.538

93.391

0.575
  recA Lactococcus lactis subsp. cremoris KW2

59.443

92.816

0.552
  recA Latilactobacillus sakei subsp. sakei 23K

59.502

92.241

0.549