Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | O2T11_RS13270 | Genome accession | NZ_CP114186 |
| Coordinates | 2785860..2786903 (-) | Length | 347 a.a. |
| NCBI ID | WP_005478550.1 | Uniprot ID | Q87LR1 |
| Organism | Vibrio parahaemolyticus strain PH1273 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 2787104..2821605 | 2785860..2786903 | flank | 201 |
Gene organization within MGE regions
Location: 2785860..2821605
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| O2T11_RS13270 (O2T11_13270) | recA | 2785860..2786903 (-) | 1044 | WP_005478550.1 | recombinase RecA | Machinery gene |
| O2T11_RS13275 (O2T11_13275) | pncC | 2787104..2787586 (-) | 483 | WP_005455551.1 | nicotinamide-nucleotide amidase | - |
| O2T11_RS13280 (O2T11_13280) | - | 2787983..2788097 (+) | 115 | Protein_2500 | integrase | - |
| O2T11_RS13285 (O2T11_13285) | - | 2788162..2788887 (-) | 726 | Protein_2501 | N-6 DNA methylase | - |
| O2T11_RS13290 (O2T11_13290) | tnpA | 2789105..2789551 (-) | 447 | WP_042473647.1 | IS200/IS605 family transposase | - |
| O2T11_RS13295 (O2T11_13295) | - | 2789723..2790364 (-) | 642 | WP_283658207.1 | TetR/AcrR family transcriptional regulator | - |
| O2T11_RS13300 (O2T11_13300) | - | 2790556..2792187 (+) | 1632 | WP_283658208.1 | PTS transporter subunit EIIC | - |
| O2T11_RS13305 (O2T11_13305) | - | 2792198..2792521 (+) | 324 | WP_374214373.1 | PTS lactose/cellobiose transporter subunit IIA | - |
| O2T11_RS13310 (O2T11_13310) | - | 2792521..2793927 (+) | 1407 | WP_283658209.1 | glycoside hydrolase family 1 protein | - |
| O2T11_RS13315 (O2T11_13315) | istA | 2794310..2795842 (+) | 1533 | WP_055452957.1 | IS21 family transposase | - |
| O2T11_RS13320 (O2T11_13320) | istB | 2795853..2796593 (+) | 741 | WP_276406249.1 | IS21-like element ISVch3 family helper ATPase IstB | - |
| O2T11_RS26200 | - | 2796625..2796903 (+) | 279 | WP_374214377.1 | 5'/3'-nucleotidase SurE | - |
| O2T11_RS13325 (O2T11_13325) | - | 2796875..2797109 (-) | 235 | Protein_2510 | IS3 family transposase | - |
| O2T11_RS13330 (O2T11_13330) | - | 2797278..2798033 (-) | 756 | WP_283658210.1 | N-6 DNA methylase | - |
| O2T11_RS13335 (O2T11_13335) | - | 2798085..2799311 (-) | 1227 | WP_283658211.1 | anaerobic sulfatase maturase | - |
| O2T11_RS13340 (O2T11_13340) | - | 2799412..2801286 (-) | 1875 | WP_283658212.1 | arylsulfatase | - |
| O2T11_RS13345 (O2T11_13345) | - | 2801318..2802466 (-) | 1149 | WP_283658213.1 | hypothetical protein | - |
| O2T11_RS13350 (O2T11_13350) | - | 2802591..2803994 (-) | 1404 | WP_283658214.1 | glycoside hydrolase family 1 protein | - |
| O2T11_RS13355 (O2T11_13355) | - | 2804032..2805432 (-) | 1401 | WP_283658215.1 | PTS transporter subunit EIIC | - |
| O2T11_RS13360 (O2T11_13360) | licT | 2806097..2806948 (+) | 852 | WP_283658216.1 | BglG family transcription antiterminator LicT | - |
| O2T11_RS13365 (O2T11_13365) | - | 2806957..2808891 (+) | 1935 | WP_283658217.1 | glucose PTS transporter subunit IIA | - |
| O2T11_RS13370 (O2T11_13370) | - | 2809482..2809730 (+) | 249 | Protein_2519 | transposase | - |
| O2T11_RS13375 (O2T11_13375) | - | 2809977..2811020 (-) | 1044 | WP_283658218.1 | IS110 family transposase | - |
| O2T11_RS13380 (O2T11_13380) | - | 2811091..2811981 (+) | 891 | Protein_2521 | IS3 family transposase | - |
| O2T11_RS13385 (O2T11_13385) | - | 2812048..2812389 (-) | 342 | WP_283658219.1 | hypothetical protein | - |
| O2T11_RS13390 (O2T11_13390) | - | 2812399..2812983 (-) | 585 | WP_283658220.1 | DUF2913 family protein | - |
| O2T11_RS13395 (O2T11_13395) | - | 2813494..2813718 (-) | 225 | WP_283658221.1 | hypothetical protein | - |
| O2T11_RS13400 (O2T11_13400) | - | 2813883..2814059 (-) | 177 | WP_025542599.1 | AlpA family transcriptional regulator | - |
| O2T11_RS13405 (O2T11_13405) | radC | 2814204..2814677 (+) | 474 | WP_017448160.1 | DNA repair protein RadC | - |
| O2T11_RS13410 (O2T11_13410) | - | 2814674..2815105 (+) | 432 | WP_021452675.1 | DUF2787 domain-containing protein | - |
| O2T11_RS13415 (O2T11_13415) | - | 2815219..2816043 (+) | 825 | WP_306310435.1 | YafY family protein | - |
| O2T11_RS13420 (O2T11_13420) | - | 2816040..2817200 (+) | 1161 | WP_283658223.1 | hypothetical protein | - |
| O2T11_RS13425 (O2T11_13425) | - | 2817394..2818071 (-) | 678 | WP_283658224.1 | inovirus Gp2 family protein | - |
| O2T11_RS13430 (O2T11_13430) | - | 2818483..2819463 (+) | 981 | WP_283658225.1 | hypothetical protein | - |
| O2T11_RS13435 (O2T11_13435) | - | 2819565..2820197 (+) | 633 | Protein_2532 | IS5 family transposase | - |
| O2T11_RS13440 (O2T11_13440) | - | 2820265..2821605 (-) | 1341 | WP_140331138.1 | site-specific integrase | - |
Sequence
Protein
Download Length: 347 a.a. Molecular weight: 37432.91 Da Isoelectric Point: 5.1850
>NTDB_id=764926 O2T11_RS13270 WP_005478550.1 2785860..2786903(-) (recA) [Vibrio parahaemolyticus strain PH1273]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRAMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIA
AAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNE
TRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKLVEKAGAWYSYNGDKIGQGKANACNYLREHPEIAKTIDT
KLREMLLSPAQPEAPAAGEKPEQEEEF
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRAMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIA
AAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNE
TRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKLVEKAGAWYSYNGDKIGQGKANACNYLREHPEIAKTIDT
KLREMLLSPAQPEAPAAGEKPEQEEEF
Nucleotide
Download Length: 1044 bp
>NTDB_id=764926 O2T11_RS13270 WP_005478550.1 2785860..2786903(-) (recA) [Vibrio parahaemolyticus strain PH1273]
ATGGACGAGAACAAACAGAAAGCGCTCGCCGCTGCGCTAGGTCAAATTGAAAAGCAATTCGGTAAAGGCTCTATCATGCG
CCTTGGTGATAACCGCGCAATGGATGTAGAAACCATTTCAACGGGTTCGCTTTCTCTTGACATCGCTTTGGGTGCTGGTG
GTCTACCAATGGGTCGTATTGTTGAGATTTACGGTCCAGAATCTTCAGGTAAAACAACACTAACTCTTGAACTTATTGCT
GCTGCGCAACGTGAAGGCAAAACTTGTGCGTTTATCGATGCAGAGCACGCTCTAGATCCTGTATATGCAAAGAAACTTGG
CGTTGATATCGATGCACTATTGGTTTCTCAACCAGACACTGGTGAGCAAGCTCTAGAGATTTGTGATGCATTAGCTCGCT
CTGGTGCAATCGACGTAATGGTTGTTGACTCTGTTGCTGCTCTAACACCTAAAGCTGAGATCGAAGGTGAAATGGGCGAC
AGCCACATGGGTCTCCAAGCTCGTATGCTTTCTCAAGCAATGCGTAAGCTTACAGGTAACCTGAAACAGTCTAACTGTAT
GTGTATCTTCATCAACCAAATCCGTATGAAGATTGGTGTGATGTTCGGTAACCCTGAAACGACTACTGGCGGTAATGCGC
TTAAGTTTTACGCTTCTGTTCGTTTAGATATCCGTCGTACTGGCGCAATCAAAGAAGGCGACGAAGTTGTAGGTAACGAA
ACGCGTATCAAAGTGGTTAAGAACAAGATTGCAGCACCATTTAAAGAAGCAAACACGCAAATCATGTATGGCCAAGGCTT
TAACCGTGAAGGTGAGTTGATTGACTTAGGCGTGAAGCACAAGCTAGTAGAAAAAGCGGGTGCTTGGTACAGCTACAATG
GCGATAAGATTGGTCAAGGTAAAGCAAACGCTTGTAACTACCTGCGTGAGCATCCAGAAATCGCGAAAACAATCGATACC
AAACTGCGTGAAATGCTACTTTCTCCAGCTCAACCAGAAGCACCTGCTGCCGGTGAGAAGCCTGAGCAAGAAGAAGAGTT
TTAA
ATGGACGAGAACAAACAGAAAGCGCTCGCCGCTGCGCTAGGTCAAATTGAAAAGCAATTCGGTAAAGGCTCTATCATGCG
CCTTGGTGATAACCGCGCAATGGATGTAGAAACCATTTCAACGGGTTCGCTTTCTCTTGACATCGCTTTGGGTGCTGGTG
GTCTACCAATGGGTCGTATTGTTGAGATTTACGGTCCAGAATCTTCAGGTAAAACAACACTAACTCTTGAACTTATTGCT
GCTGCGCAACGTGAAGGCAAAACTTGTGCGTTTATCGATGCAGAGCACGCTCTAGATCCTGTATATGCAAAGAAACTTGG
CGTTGATATCGATGCACTATTGGTTTCTCAACCAGACACTGGTGAGCAAGCTCTAGAGATTTGTGATGCATTAGCTCGCT
CTGGTGCAATCGACGTAATGGTTGTTGACTCTGTTGCTGCTCTAACACCTAAAGCTGAGATCGAAGGTGAAATGGGCGAC
AGCCACATGGGTCTCCAAGCTCGTATGCTTTCTCAAGCAATGCGTAAGCTTACAGGTAACCTGAAACAGTCTAACTGTAT
GTGTATCTTCATCAACCAAATCCGTATGAAGATTGGTGTGATGTTCGGTAACCCTGAAACGACTACTGGCGGTAATGCGC
TTAAGTTTTACGCTTCTGTTCGTTTAGATATCCGTCGTACTGGCGCAATCAAAGAAGGCGACGAAGTTGTAGGTAACGAA
ACGCGTATCAAAGTGGTTAAGAACAAGATTGCAGCACCATTTAAAGAAGCAAACACGCAAATCATGTATGGCCAAGGCTT
TAACCGTGAAGGTGAGTTGATTGACTTAGGCGTGAAGCACAAGCTAGTAGAAAAAGCGGGTGCTTGGTACAGCTACAATG
GCGATAAGATTGGTCAAGGTAAAGCAAACGCTTGTAACTACCTGCGTGAGCATCCAGAAATCGCGAAAACAATCGATACC
AAACTGCGTGAAATGCTACTTTCTCCAGCTCAACCAGAAGCACCTGCTGCCGGTGAGAAGCCTGAGCAAGAAGAAGAGTT
TTAA
Similar proteins
Only experimentally validated proteins are listed.