Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   O0N60_RS15380 Genome accession   NZ_CP114039
Coordinates   3680016..3681041 (-) Length   341 a.a.
NCBI ID   WP_206799133.1    Uniprot ID   -
Organism   Corallococcus sp. NCRR     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3675016..3686041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O0N60_RS15360 (O0N60_15360) pssA 3675776..3676633 (+) 858 WP_206799137.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  O0N60_RS15365 (O0N60_15365) - 3676691..3677956 (+) 1266 WP_206799136.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  O0N60_RS15370 (O0N60_15370) - 3677953..3679452 (+) 1500 WP_206799135.1 hypothetical protein -
  O0N60_RS15375 (O0N60_15375) - 3679510..3680019 (+) 510 WP_206799134.1 DUF1285 domain-containing protein -
  O0N60_RS15380 (O0N60_15380) recA 3680016..3681041 (-) 1026 WP_206799133.1 recombinase RecA Machinery gene
  O0N60_RS15385 (O0N60_15385) - 3681325..3682704 (+) 1380 WP_206799132.1 NAD(P)/FAD-dependent oxidoreductase -
  O0N60_RS15390 (O0N60_15390) - 3682657..3684264 (-) 1608 WP_206799131.1 YifB family Mg chelatase-like AAA ATPase -
  O0N60_RS15395 (O0N60_15395) - 3684465..3684971 (-) 507 WP_206799130.1 biopolymer transporter ExbD -
  O0N60_RS15400 (O0N60_15400) - 3684971..3685381 (-) 411 WP_120523783.1 biopolymer transporter ExbD -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 35930.19 Da        Isoelectric Point: 7.0572

>NTDB_id=764223 O0N60_RS15380 WP_206799133.1 3680016..3681041(-) (recA) [Corallococcus sp. NCRR]
MSRLTEKLKAVAAAVASIEKQFGRGAVMTLGADAPEQKVAVIPTGSVGLDRALGVGGYPRGRVVELFGNESSGKTTLTLH
AIAQVQAVGGVAAFIDAEHALDLSYARKLGVRTEELLVAQPDTGEQALEITEQLVRSGAVDLIVVDSVAALVPRAEIEGE
MGDAHMGVQARLMSQALRKLTGAVSRSGTCIIFINQIRMKIGVMFGNPETTTGGNALKFYASVRMEIRRTGNLKEGDAVV
GSRARVKVVKNKLAPPFQEAEFDVLYGTGIHRAAEVLDLAVTAGVVEKSGSHFSLRGERIGQGRERACEWLREHPDVLEG
LARDLVGATAPSVPSADAAAA

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=764223 O0N60_RS15380 WP_206799133.1 3680016..3681041(-) (recA) [Corallococcus sp. NCRR]
ATGAGCAGGCTGACGGAGAAGTTGAAGGCAGTGGCAGCGGCGGTGGCGTCCATCGAGAAGCAGTTCGGCCGGGGCGCGGT
GATGACGCTCGGCGCGGACGCACCGGAGCAGAAGGTGGCGGTCATTCCCACGGGCTCGGTGGGGTTGGACCGGGCGCTGG
GCGTGGGGGGCTATCCGAGAGGGCGCGTGGTGGAGCTGTTCGGCAACGAGTCCTCCGGCAAGACGACGCTCACCCTGCAT
GCCATCGCGCAGGTGCAGGCCGTGGGAGGCGTCGCGGCCTTCATCGACGCGGAGCACGCGCTGGACCTGTCCTATGCGCG
CAAGCTGGGGGTGCGGACGGAGGAGCTGCTCGTGGCGCAGCCGGACACCGGGGAGCAGGCGCTCGAAATCACCGAGCAGC
TCGTGCGCTCGGGCGCGGTGGACCTCATCGTGGTGGATTCGGTGGCGGCGCTGGTCCCCCGCGCGGAAATCGAAGGCGAG
ATGGGCGACGCGCACATGGGCGTCCAGGCGCGTCTGATGAGCCAGGCGCTGCGCAAGCTCACGGGCGCGGTGAGCCGCTC
CGGCACCTGCATCATCTTCATCAACCAGATCCGCATGAAGATTGGCGTGATGTTCGGCAACCCGGAGACGACGACGGGTG
GCAACGCGCTGAAGTTCTACGCGTCGGTGCGGATGGAGATCCGCCGCACGGGCAACCTCAAGGAGGGCGACGCGGTGGTG
GGCTCGCGGGCCCGCGTGAAGGTGGTGAAGAACAAGCTGGCACCCCCGTTCCAGGAAGCGGAGTTCGACGTGCTCTACGG
CACGGGCATCCACCGAGCCGCCGAGGTGCTGGACCTGGCCGTGACCGCGGGCGTGGTGGAGAAGTCGGGCAGCCACTTCA
GCCTGCGGGGTGAGCGCATCGGCCAGGGGCGCGAGCGGGCGTGCGAGTGGCTGCGAGAGCACCCGGACGTCCTGGAGGGC
CTCGCTCGCGACCTGGTGGGCGCCACCGCGCCCTCCGTGCCTTCCGCGGACGCCGCGGCGGCCTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

66.667

92.375

0.616
  recA Pseudomonas stutzeri DSM 10701

66.346

91.496

0.607
  recA Vibrio cholerae strain A1552

63.95

93.548

0.598
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.95

93.548

0.598
  recA Acinetobacter baylyi ADP1

64.952

91.202

0.592
  recA Acinetobacter baumannii D1279779

63.323

93.548

0.592
  recA Glaesserella parasuis strain SC1401

60.119

98.534

0.592
  recA Neisseria gonorrhoeae MS11

63.782

91.496

0.584
  recA Neisseria gonorrhoeae MS11

63.782

91.496

0.584
  recA Neisseria gonorrhoeae strain FA1090

63.782

91.496

0.584
  recA Bacillus subtilis subsp. subtilis str. 168

61.905

92.375

0.572
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.813

94.135

0.563
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.063

93.255

0.56
  recA Latilactobacillus sakei subsp. sakei 23K

60.897

91.496

0.557
  recA Helicobacter pylori 26695

60.518

90.616

0.548
  recA Helicobacter pylori strain NCTC11637

60.518

90.616

0.548
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.716

95.015

0.548
  recA Streptococcus pyogenes NZ131

57.453

94.428

0.543
  recA Streptococcus pneumoniae TIGR4

56.173

95.015

0.534
  recA Streptococcus pneumoniae Rx1

56.173

95.015

0.534
  recA Streptococcus pneumoniae D39

56.173

95.015

0.534
  recA Streptococcus pneumoniae R6

56.173

95.015

0.534
  recA Lactococcus lactis subsp. cremoris KW2

56.918

93.255

0.531
  recA Streptococcus mutans UA159

56.25

93.842

0.528
  recA Streptococcus mitis SK321

56.467

92.962

0.525
  recA Streptococcus mitis NCTC 12261

55.975

93.255

0.522