Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   O0N60_RS15050 Genome accession   NZ_CP114039
Coordinates   3590654..3591739 (+) Length   361 a.a.
NCBI ID   WP_206799202.1    Uniprot ID   -
Organism   Corallococcus sp. NCRR     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3585654..3596739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O0N60_RS15020 (O0N60_15020) glmS 3585934..3587769 (+) 1836 WP_206799206.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -
  O0N60_RS15025 (O0N60_15025) - 3587847..3588110 (-) 264 WP_269012998.1 hypothetical protein -
  O0N60_RS15030 (O0N60_15030) - 3588107..3588601 (-) 495 WP_206799205.1 DUF3106 domain-containing protein -
  O0N60_RS15035 (O0N60_15035) - 3588601..3589080 (-) 480 WP_206799204.1 zf-HC2 domain-containing protein -
  O0N60_RS15040 (O0N60_15040) - 3589077..3589679 (-) 603 WP_120576842.1 sigma-70 family RNA polymerase sigma factor -
  O0N60_RS15045 (O0N60_15045) - 3589771..3590541 (+) 771 WP_206799203.1 hypothetical protein -
  O0N60_RS15050 (O0N60_15050) recA 3590654..3591739 (+) 1086 WP_206799202.1 recombinase RecA Machinery gene
  O0N60_RS15055 (O0N60_15055) - 3591910..3594132 (+) 2223 WP_206799201.1 alkaline phosphatase D family protein -
  O0N60_RS15060 (O0N60_15060) - 3594291..3596348 (+) 2058 WP_206799200.1 right-handed parallel beta-helix repeat-containing protein -

Sequence

Protein


Download         Length: 361 a.a.        Molecular weight: 38839.61 Da        Isoelectric Point: 6.8716

>NTDB_id=764222 O0N60_RS15050 WP_206799202.1 3590654..3591739(+) (recA) [Corallococcus sp. NCRR]
MAVNQEKEKAIELALAAVERQFGKGSIMRLGNDEPMMKDVQAISTGSTSLDIALGVGGVPRGRIIEIFGPESSGKTTLCL
HIVAEAQKKGGVCGYIDAEHAMDVGYARKLGVRTDDLLLSQPDTGEQGLEIAEMLVRSGAIDVLVVDSVAALVPKAELEG
EMGDAHMGVQARLMSQALRKLTGTISKSQTCVIFINQIRMKIGVMFGNPETTTGGNALKFYASQRMDIRRVGAIKNGENV
VGSRTRVKVVKNKVAPPFKEVEFDIMYGAGISKEGDLIDLASNENIIEKSGSWFSFKGERIGQGRENAKEYLREHPETYK
EVESLVLEKYGIGKTAGAAAPAAEASEPAEGEKRPRVKAVK

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=764222 O0N60_RS15050 WP_206799202.1 3590654..3591739(+) (recA) [Corallococcus sp. NCRR]
ATGGCCGTGAATCAGGAGAAGGAAAAGGCGATCGAGCTGGCGCTGGCGGCGGTGGAGCGTCAGTTCGGCAAGGGGTCCAT
CATGCGGCTCGGCAACGACGAGCCCATGATGAAGGACGTCCAGGCCATTTCGACGGGGTCCACTTCGCTCGACATCGCCC
TGGGCGTGGGCGGCGTGCCGCGCGGGCGCATTATCGAAATCTTCGGGCCGGAGTCCTCCGGCAAGACGACGCTGTGTCTC
CACATCGTCGCGGAGGCGCAGAAGAAGGGCGGCGTGTGCGGCTACATCGACGCGGAGCACGCCATGGACGTGGGCTACGC
GCGCAAGCTGGGCGTGCGCACCGACGACCTGCTCCTGTCCCAGCCGGACACCGGTGAGCAGGGCCTGGAAATCGCGGAGA
TGCTCGTGCGCTCCGGCGCCATCGACGTGCTGGTGGTGGACTCGGTGGCCGCGCTCGTGCCGAAGGCGGAACTGGAAGGC
GAGATGGGCGACGCGCACATGGGCGTGCAGGCCCGCCTCATGAGCCAGGCGCTGCGCAAGCTCACGGGCACCATCTCCAA
GAGCCAGACGTGCGTCATCTTCATCAACCAGATCCGCATGAAGATTGGCGTGATGTTCGGCAACCCTGAGACGACGACGG
GCGGCAACGCGCTGAAGTTCTACGCGTCGCAGCGCATGGACATCCGCCGCGTGGGCGCCATCAAGAACGGCGAGAACGTG
GTGGGCAGCCGCACCCGCGTGAAGGTCGTGAAGAACAAGGTGGCGCCGCCGTTCAAGGAAGTCGAATTCGACATCATGTA
CGGCGCGGGCATCTCGAAGGAGGGCGACCTCATCGACCTGGCCTCCAACGAGAACATCATCGAGAAGAGCGGCAGCTGGT
TCTCCTTCAAGGGAGAGCGCATCGGCCAGGGCCGGGAGAACGCGAAGGAGTACCTGCGCGAGCACCCGGAGACCTACAAG
GAGGTCGAGAGCCTGGTGCTGGAGAAGTACGGCATTGGCAAGACGGCCGGTGCGGCGGCCCCCGCGGCGGAAGCAAGCGA
GCCGGCGGAAGGCGAGAAGCGCCCGCGCGTGAAGGCCGTGAAGTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

66.97

91.413

0.612
  recA Latilactobacillus sakei subsp. sakei 23K

63.717

93.906

0.598
  recA Vibrio cholerae strain A1552

66.044

88.92

0.587
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.044

88.92

0.587
  recA Pseudomonas stutzeri DSM 10701

61.988

94.737

0.587
  recA Neisseria gonorrhoeae MS11

64.815

89.751

0.582
  recA Neisseria gonorrhoeae strain FA1090

64.815

89.751

0.582
  recA Neisseria gonorrhoeae MS11

64.815

89.751

0.582
  recA Glaesserella parasuis strain SC1401

60.172

96.676

0.582
  recA Acinetobacter baylyi ADP1

60.405

95.845

0.579
  recA Acinetobacter baumannii D1279779

61.905

93.075

0.576
  recA Streptococcus pneumoniae R6

61.934

91.69

0.568
  recA Streptococcus pneumoniae Rx1

61.934

91.69

0.568
  recA Streptococcus pneumoniae D39

61.934

91.69

0.568
  recA Streptococcus pneumoniae TIGR4

61.934

91.69

0.568
  recA Helicobacter pylori strain NCTC11637

61.747

91.967

0.568
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.631

91.69

0.565
  recA Helicobacter pylori 26695

61.145

91.967

0.562
  recA Bacillus subtilis subsp. subtilis str. 168

61.774

90.582

0.56
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.037

89.751

0.557
  recA Streptococcus mitis NCTC 12261

60.725

91.69

0.557
  recA Streptococcus mitis SK321

60.725

91.69

0.557
  recA Streptococcus pyogenes NZ131

57.593

96.676

0.557
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.241

91.967

0.554
  recA Lactococcus lactis subsp. cremoris KW2

58.006

91.69

0.532
  recA Streptococcus mutans UA159

57.704

91.69

0.529