Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   O0V01_RS11330 Genome accession   NZ_CP114031
Coordinates   2537191..2538249 (+) Length   352 a.a.
NCBI ID   WP_272049218.1    Uniprot ID   -
Organism   Paenibacillus thiaminolyticus strain PATH554     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2532191..2543249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O0V01_RS11305 (O0V01_11310) - 2532578..2532742 (+) 165 WP_272049215.1 hypothetical protein -
  O0V01_RS11310 (O0V01_11315) - 2532856..2533344 (+) 489 WP_087441373.1 YajQ family cyclic di-GMP-binding protein -
  O0V01_RS11315 (O0V01_11320) rimO 2533656..2534984 (+) 1329 WP_272049216.1 30S ribosomal protein S12 methylthiotransferase RimO -
  O0V01_RS11320 (O0V01_11325) pgsA 2534981..2535559 (+) 579 WP_087441371.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  O0V01_RS11325 (O0V01_11330) - 2535689..2536945 (+) 1257 WP_284657574.1 competence/damage-inducible protein A -
  O0V01_RS11330 (O0V01_11335) recA 2537191..2538249 (+) 1059 WP_272049218.1 recombinase RecA Machinery gene
  O0V01_RS11335 (O0V01_11340) - 2538407..2539069 (+) 663 WP_284657575.1 RecX family transcriptional regulator -
  O0V01_RS11340 (O0V01_11345) rny 2539395..2540942 (+) 1548 WP_006678358.1 ribonuclease Y -
  O0V01_RS11345 (O0V01_11350) - 2541013..2541807 (+) 795 WP_284657576.1 TIGR00282 family metallophosphoesterase -
  O0V01_RS11350 (O0V01_11355) - 2542172..2542432 (+) 261 WP_006286829.1 stage V sporulation protein S -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38015.34 Da        Isoelectric Point: 5.1930

>NTDB_id=764071 O0V01_RS11330 WP_272049218.1 2537191..2538249(+) (recA) [Paenibacillus thiaminolyticus strain PATH554]
MSDRRAALEMALRQIEKQFGKGSIMKLGESNHMQVEIVPSGSLALDIALGIGGLPRGRIIEVYGPESSGKTTVALHAIAE
AQKVGGQAAFIDAEHALDPTYASKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAISKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSTIRLDVRRVETIKQGNDMIGNRT
RIKVVKNKVAPPFKQADIDIMYGEGISREGSIVDIGTEMDIIQKSGAWYSYEGERLGQGRENAKQFLKENGDLALTIENK
VREASNLSTVVQNHSAHDAEEAEDALELKLES

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=764071 O0V01_RS11330 WP_272049218.1 2537191..2538249(+) (recA) [Paenibacillus thiaminolyticus strain PATH554]
GTGTCAGATCGCCGCGCTGCACTAGAAATGGCATTGCGCCAAATCGAGAAACAATTCGGTAAAGGTTCGATCATGAAACT
TGGCGAGTCCAACCATATGCAGGTTGAGATTGTGCCGAGCGGATCGTTGGCACTTGATATAGCTCTTGGAATCGGCGGAT
TGCCAAGAGGACGGATTATTGAAGTATATGGACCGGAATCTTCCGGTAAGACGACGGTTGCGCTTCACGCGATTGCTGAA
GCGCAGAAGGTTGGCGGACAAGCTGCGTTCATCGATGCGGAGCACGCGCTCGATCCTACATACGCGAGCAAGCTTGGCGT
CAACATCGACGAGTTGCTTCTGTCCCAGCCGGATACAGGGGAGCAGGCGCTCGAGATTGCCGAGGCGCTCGTGCGCAGCG
GCGCGGTAGACATTATCGTTATCGACTCCGTCGCGGCTCTCGTGCCGAAGGCGGAGATTGAAGGTGAGATGGGAGACTCC
CACGTCGGTCTGCAAGCCCGGCTCATGTCCCAGGCGCTTCGCAAATTGTCCGGGGCGATCAGCAAGTCCAAGACGATAGC
GATCTTCATTAACCAGTTGCGCGAGAAGGTCGGCGTCATGTTCGGCAACCCGGAGACGACACCAGGCGGCCGCGCATTGA
AGTTCTACTCGACGATCCGGCTGGATGTCCGGCGGGTCGAGACGATCAAGCAGGGCAACGACATGATCGGGAACCGGACA
CGCATCAAGGTCGTGAAGAACAAGGTCGCGCCTCCATTCAAGCAGGCAGACATCGATATTATGTACGGCGAAGGGATTTC
CCGGGAAGGAAGCATCGTAGATATCGGCACGGAGATGGATATTATCCAGAAGAGCGGAGCCTGGTATTCGTACGAAGGCG
AGCGTCTGGGTCAAGGCCGTGAGAATGCGAAGCAATTCCTGAAGGAGAATGGGGATCTGGCTCTGACAATCGAGAACAAG
GTTCGTGAAGCAAGCAATTTGTCGACGGTGGTCCAGAACCATTCCGCGCATGATGCTGAAGAGGCTGAGGACGCTCTTGA
GCTGAAGCTGGAATCGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

82.569

92.898

0.767
  recA Latilactobacillus sakei subsp. sakei 23K

74.085

93.182

0.69
  recA Streptococcus pyogenes NZ131

69.753

92.045

0.642
  recA Streptococcus mutans UA159

69.444

92.045

0.639
  recA Lactococcus lactis subsp. cremoris KW2

67.576

93.75

0.634
  recA Streptococcus pneumoniae TIGR4

68.308

92.33

0.631
  recA Streptococcus pneumoniae R6

68.308

92.33

0.631
  recA Streptococcus mitis SK321

68.308

92.33

0.631
  recA Streptococcus mitis NCTC 12261

68.308

92.33

0.631
  recA Streptococcus pneumoniae Rx1

68.308

92.33

0.631
  recA Streptococcus pneumoniae D39

68.308

92.33

0.631
  recA Ralstonia pseudosolanacearum GMI1000

66.055

92.898

0.614
  recA Vibrio cholerae strain A1552

63.235

96.591

0.611
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.235

96.591

0.611
  recA Glaesserella parasuis strain SC1401

61.143

99.432

0.608
  recA Acinetobacter baylyi ADP1

61.032

99.148

0.605
  recA Acinetobacter baumannii D1279779

60.807

98.58

0.599
  recA Neisseria gonorrhoeae MS11

65.109

91.193

0.594
  recA Neisseria gonorrhoeae strain FA1090

65.109

91.193

0.594
  recA Neisseria gonorrhoeae MS11

65.109

91.193

0.594
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.303

92.898

0.588
  recA Pseudomonas stutzeri DSM 10701

60.058

97.443

0.585
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.294

96.591

0.582
  recA Helicobacter pylori 26695

60.991

91.761

0.56
  recA Helicobacter pylori strain NCTC11637

60.991

91.761

0.56
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.991

91.761

0.56