Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   OTR81_RS14760 Genome accession   NZ_CP113980
Coordinates   3082998..3084044 (+) Length   348 a.a.
NCBI ID   WP_036094037.1    Uniprot ID   A0A841YSS6
Organism   Listeria newyorkensis strain CMB191063     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3077998..3089044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OTR81_RS14740 (OTR81_12830) ymfI 3078934..3079668 (+) 735 WP_036094028.1 elongation factor P 5-aminopentanone reductase -
  OTR81_RS14745 (OTR81_12825) - 3079703..3080668 (+) 966 WP_036094030.1 helix-turn-helix domain-containing protein -
  OTR81_RS14750 (OTR81_12820) pgsA 3080789..3081367 (+) 579 WP_036094033.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  OTR81_RS14755 (OTR81_12815) cinA 3081461..3082723 (+) 1263 WP_036094036.1 competence/damage-inducible protein A Machinery gene
  OTR81_RS14760 (OTR81_12810) recA 3082998..3084044 (+) 1047 WP_036094037.1 recombinase RecA Machinery gene
  OTR81_RS14765 (OTR81_12805) rny 3084284..3085846 (+) 1563 WP_036094039.1 ribonuclease Y -
  OTR81_RS14770 (OTR81_12800) - 3085975..3086472 (+) 498 WP_036094041.1 GNAT family N-acetyltransferase -
  OTR81_RS14775 (OTR81_12795) - 3086536..3087336 (+) 801 WP_036094042.1 TIGR00282 family metallophosphoesterase -
  OTR81_RS14780 (OTR81_12790) - 3087356..3087712 (+) 357 WP_036094044.1 RicAFT regulatory complex protein RicA family protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37951.07 Da        Isoelectric Point: 4.8494

>NTDB_id=764002 OTR81_RS14760 WP_036094037.1 3082998..3084044(+) (recA) [Listeria newyorkensis strain CMB191063]
MSDRQAALDQALKQIEKQFGKGSIMKLGEQSDHNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDILVIDSVAALVPRAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPEITPGGRALKFYSTVRLEVRRAEQLKQGTDVIGNKT
KIKVVKNKVAPPFRVAEVDVMYGFGISREGELVDMASEIDVINKSGSWYSYNEERIGQGRENAKQYLKEHPEIRDEISKR
VRQEYEIDVKPNLAEEALPEEINLLDED

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=764002 OTR81_RS14760 WP_036094037.1 3082998..3084044(+) (recA) [Listeria newyorkensis strain CMB191063]
GTGAGTGATCGTCAAGCGGCCTTAGATCAGGCGTTAAAACAAATCGAGAAGCAATTTGGTAAAGGTTCCATTATGAAGTT
AGGGGAACAATCAGATCATAATATTTCTACGATATCAAGTGGCTCTTTAGCTCTCGATATCGCACTTGGAGTCGGTGGTT
ATCCACGAGGAAGAATCATCGAAGTATACGGACCAGAGAGTTCAGGTAAAACAACCGTTGCTTTACACGCTATTGCAGAA
GTACAAGCGCAAGGCGGAACAGCGGCATTTATCGATGCTGAGCATGCATTAGATCCAGCATATGCGAAGAATCTAGGCGT
TAATATTGATGAATTATTGCTATCACAACCAGATACAGGGGAACAAGCATTAGAAATTGCTGAAGCGTTGGTCCGTAGTG
GCGCTGTCGATATTTTAGTTATTGACTCCGTAGCCGCACTCGTACCACGTGCGGAAATCGAAGGCGAAATGGGAGATTCA
CATGTCGGCTTACAAGCGCGTCTTATGTCCCAAGCCTTGCGTAAACTATCCGGTGCAATCAACAAATCCAAAACAATCGC
GATTTTCATCAACCAAATTCGTGAAAAAGTAGGCGTTATGTTCGGTAACCCTGAAATAACTCCAGGTGGACGTGCCCTTA
AATTCTACTCTACTGTTCGTTTAGAAGTAAGACGTGCAGAACAACTAAAACAAGGTACGGACGTTATCGGTAACAAAACA
AAAATCAAAGTCGTGAAAAACAAAGTAGCACCACCATTCCGTGTCGCTGAAGTAGACGTTATGTACGGCTTCGGTATTTC
ACGTGAAGGTGAACTCGTTGATATGGCCTCTGAAATTGACGTTATCAATAAGAGTGGTTCATGGTATTCTTATAACGAAG
AGCGTATTGGCCAAGGTCGCGAGAATGCGAAACAATACTTGAAAGAGCATCCAGAAATTCGCGATGAAATCTCAAAACGC
GTGCGTCAAGAATATGAAATCGATGTGAAACCTAATTTAGCAGAAGAAGCATTGCCAGAAGAAATCAATTTACTTGATGA
AGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A841YSS6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

83.841

94.253

0.79
  recA Latilactobacillus sakei subsp. sakei 23K

77.714

100

0.782
  recA Streptococcus pneumoniae D39

70.732

94.253

0.667
  recA Streptococcus pneumoniae R6

70.732

94.253

0.667
  recA Streptococcus pneumoniae Rx1

70.732

94.253

0.667
  recA Streptococcus pneumoniae TIGR4

70.732

94.253

0.667
  recA Streptococcus pyogenes NZ131

70.948

93.966

0.667
  recA Streptococcus mutans UA159

67.638

98.563

0.667
  recA Streptococcus mitis NCTC 12261

69.817

94.253

0.658
  recA Streptococcus mitis SK321

69.207

94.253

0.652
  recA Lactococcus lactis subsp. cremoris KW2

68.293

94.253

0.644
  recA Neisseria gonorrhoeae strain FA1090

65.421

92.241

0.603
  recA Neisseria gonorrhoeae MS11

65.421

92.241

0.603
  recA Neisseria gonorrhoeae MS11

65.421

92.241

0.603
  recA Ralstonia pseudosolanacearum GMI1000

64.11

93.678

0.601
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.486

92.241

0.595
  recA Vibrio cholerae strain A1552

64.486

92.241

0.595
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.691

93.966

0.589
  recA Glaesserella parasuis strain SC1401

63.636

91.667

0.583
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.125

91.954

0.58
  recA Acinetobacter baylyi ADP1

61.491

92.529

0.569
  recA Pseudomonas stutzeri DSM 10701

61.875

91.954

0.569
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60

94.828

0.569
  recA Acinetobacter baumannii D1279779

60.87

92.529

0.563
  recA Helicobacter pylori 26695

60.559

92.529

0.56
  recA Helicobacter pylori strain NCTC11637

60.559

92.529

0.56