Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   OZP07_RS21815 Genome accession   NZ_CP113975
Coordinates   5247760..5248779 (+) Length   339 a.a.
NCBI ID   WP_194643926.1    Uniprot ID   -
Organism   Flavobacterium marginilacus strain IMCC34673     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5242760..5253779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZP07_RS21790 - 5242865..5244154 (-) 1290 WP_194643917.1 hypothetical protein -
  OZP07_RS21795 - 5244260..5244709 (-) 450 WP_281636764.1 hypothetical protein -
  OZP07_RS21800 - 5245119..5246255 (+) 1137 WP_281636765.1 DNA polymerase III subunit delta' -
  OZP07_RS21805 - 5246353..5246736 (+) 384 WP_281636766.1 DoxX family protein -
  OZP07_RS21810 - 5246848..5247360 (+) 513 WP_194643924.1 acyl-CoA thioesterase -
  OZP07_RS21815 recA 5247760..5248779 (+) 1020 WP_194643926.1 recombinase RecA Machinery gene
  OZP07_RS21820 - 5249072..5249833 (-) 762 WP_281636767.1 lysophospholipid acyltransferase family protein -
  OZP07_RS21825 trpS 5250026..5251000 (+) 975 WP_281636768.1 tryptophan--tRNA ligase -
  OZP07_RS21830 - 5251081..5251551 (-) 471 WP_281636769.1 Lrp/AsnC ligand binding domain-containing protein -
  OZP07_RS21835 - 5251739..5252551 (+) 813 WP_281636770.1 DUF1338 domain-containing protein -

Sequence

Protein


Download         Length: 339 a.a.        Molecular weight: 36798.20 Da        Isoelectric Point: 5.3801

>NTDB_id=763944 OZP07_RS21815 WP_194643926.1 5247760..5248779(+) (recA) [Flavobacterium marginilacus strain IMCC34673]
MKEKTGSDKEAKLKALQLTLDKLDKTYGKGTVMKMGDKAIEEVETISSGSLGVDLALGVGGYPKGRIIEIFGPESSGKTT
LTLHAIAEAQKAGGIAAFIDAEHAFDRNYAEKLNVDIENLIISQPDNGEQALEIAENLIRSGAIDIVVIDSVAALTPKSE
IEGEMGDSKMGLHARLMSQALRKLTGTISKTNCTVFFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSTQIKDG
ENVLGNRTKVKIVKNKVAPPFKVAEFDIMYGEGISKTGEILDLAVEFEIIKKSGSWFSYGETKLGQGRDAVKSLIKDNPE
LAEELEEKIKTQIKELADA

Nucleotide


Download         Length: 1020 bp        

>NTDB_id=763944 OZP07_RS21815 WP_194643926.1 5247760..5248779(+) (recA) [Flavobacterium marginilacus strain IMCC34673]
ATGAAAGAAAAGACCGGTTCGGACAAAGAAGCTAAGTTAAAAGCATTGCAGCTTACGCTTGATAAATTAGACAAGACCTA
CGGAAAAGGAACTGTAATGAAAATGGGGGATAAAGCCATTGAGGAGGTTGAAACAATTTCATCTGGTTCTTTGGGAGTAG
ATTTAGCCTTGGGAGTTGGAGGTTATCCAAAAGGAAGAATTATTGAGATATTCGGACCTGAATCATCTGGTAAAACTACT
TTGACCCTGCACGCAATTGCCGAAGCTCAAAAAGCAGGAGGTATTGCAGCCTTTATAGATGCAGAACATGCATTTGACAG
AAACTATGCTGAGAAACTAAATGTTGATATCGAAAACCTAATCATTTCGCAGCCGGATAACGGGGAACAGGCACTTGAAA
TTGCCGAAAACTTAATCCGCTCCGGAGCGATTGATATCGTAGTAATTGACTCGGTAGCTGCATTGACGCCAAAAAGCGAA
ATTGAAGGTGAAATGGGAGATTCCAAAATGGGTCTTCACGCACGTTTGATGTCACAGGCTTTACGTAAATTAACAGGAAC
AATCAGCAAAACAAACTGTACTGTATTTTTCATCAACCAGCTGAGAGAGAAAATTGGTGTAATGTTTGGAAATCCTGAAA
CGACTACTGGAGGTAATGCTTTAAAATTTTACGCATCGGTACGTTTGGACATTCGCCGTTCTACTCAAATTAAAGACGGA
GAAAATGTTTTGGGTAACCGCACAAAAGTAAAAATTGTAAAAAATAAAGTAGCGCCTCCTTTCAAGGTAGCCGAATTTGA
TATCATGTACGGTGAAGGAATTTCCAAAACCGGTGAGATACTTGATCTTGCTGTTGAATTTGAAATCATCAAAAAATCGG
GTTCTTGGTTCAGTTATGGCGAAACCAAATTAGGACAAGGACGCGATGCTGTAAAATCTTTGATTAAGGACAATCCGGAA
CTGGCTGAAGAACTGGAAGAAAAAATCAAAACTCAGATTAAAGAGTTAGCTGACGCATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(14-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

76.471

100

0.767
  recA Acinetobacter baumannii D1279779

64.506

95.575

0.617
  recA Helicobacter pylori strain NCTC11637

64

95.87

0.614
  recA Helicobacter pylori 26695

64

95.87

0.614
  recA Bacillus subtilis subsp. subtilis str. 168

63.889

95.575

0.611
  recA Neisseria gonorrhoeae MS11

66.774

91.445

0.611
  recA Neisseria gonorrhoeae MS11

66.774

91.445

0.611
  recA Neisseria gonorrhoeae strain FA1090

66.774

91.445

0.611
  recA Glaesserella parasuis strain SC1401

63.19

96.165

0.608
  recA Acinetobacter baylyi ADP1

63.665

94.985

0.605
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.467

95.28

0.605
  recA Ralstonia pseudosolanacearum GMI1000

65.595

91.74

0.602
  recA Streptococcus mitis SK321

59.644

99.41

0.593
  recA Streptococcus mitis NCTC 12261

59.644

99.41

0.593
  recA Lactococcus lactis subsp. cremoris KW2

59.701

98.82

0.59
  recA Latilactobacillus sakei subsp. sakei 23K

61.491

94.985

0.584
  recA Streptococcus pneumoniae Rx1

58.754

99.41

0.584
  recA Streptococcus pneumoniae R6

58.754

99.41

0.584
  recA Streptococcus pneumoniae TIGR4

58.754

99.41

0.584
  recA Streptococcus pneumoniae D39

58.754

99.41

0.584
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.682

94.69

0.584
  recA Vibrio cholerae strain A1552

61.682

94.69

0.584
  recA Streptococcus pyogenes NZ131

60.123

96.165

0.578
  recA Pseudomonas stutzeri DSM 10701

59.568

95.575

0.569
  recA Streptococcus mutans UA159

59.133

95.28

0.563
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.231

97.05

0.546