Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   OZX57_RS05760 Genome accession   NZ_CP113942
Coordinates   1361270..1362448 (-) Length   392 a.a.
NCBI ID   WP_277161772.1    Uniprot ID   -
Organism   Bifidobacterium sp. ESL0682     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1356270..1367448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZX57_RS05745 (OZX57_05745) raiA 1359023..1359709 (-) 687 WP_277161771.1 ribosome-associated translation inhibitor RaiA -
  OZX57_RS05755 (OZX57_05755) - 1360331..1360899 (-) 569 Protein_1107 regulatory protein RecX -
  OZX57_RS05760 (OZX57_05760) recA 1361270..1362448 (-) 1179 WP_277161772.1 recombinase RecA Machinery gene
  OZX57_RS05765 (OZX57_05765) - 1362694..1362927 (-) 234 WP_277162957.1 DUF3046 domain-containing protein -
  OZX57_RS05770 (OZX57_05770) - 1363210..1363720 (-) 511 Protein_1110 helix-turn-helix transcriptional regulator -
  OZX57_RS05775 (OZX57_05775) - 1363784..1364350 (-) 567 WP_277162958.1 nicotinamide-nucleotide amidohydrolase family protein -
  OZX57_RS05780 (OZX57_05780) pgsA 1364523..1365200 (-) 678 WP_277161773.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -

Sequence

Protein


Download         Length: 392 a.a.        Molecular weight: 41418.76 Da        Isoelectric Point: 5.2036

>NTDB_id=763663 OZX57_RS05760 WP_277161772.1 1361270..1362448(-) (recA) [Bifidobacterium sp. ESL0682]
MAQQSKTTKGAKAKNAQTESGSGNGIDPRKQAALDTALKQVEKDFGKGSAMRLGDKPVQNVEVIPTGSLALDMALGIGGL
PRGRIVEIYGPESSGKTTLALHAVANAQKNGGVAAYIDAEHALDPVYAKKLGVDTDSLIISQPDNGEQALEIADMLVRSG
ALDIVVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMTGALAQSNTTAIFINQLREKIGVFFGSPETTTGGKALK
FYASVRLDIRRIQTLKNGDEAIGNRTKVKVVKNKMAPPFKFAEFDILYGEGISKEGSVLDMALQSDVVKKSGSWFTYEGD
QLGQGRENVRQFLKDNPALTEEIERKVKVKYGLIPDDSQPADGGDADKGEGTDSAADANGDAAPASESVSNA

Nucleotide


Download         Length: 1179 bp        

>NTDB_id=763663 OZX57_RS05760 WP_277161772.1 1361270..1362448(-) (recA) [Bifidobacterium sp. ESL0682]
ATGGCACAGCAATCAAAAACGACGAAAGGCGCCAAGGCCAAGAACGCCCAGACCGAGTCTGGTAGCGGGAATGGCATCGA
TCCGCGCAAGCAGGCGGCGCTCGACACCGCACTGAAGCAGGTCGAAAAGGACTTCGGCAAGGGATCGGCCATGAGGCTTG
GCGACAAGCCTGTGCAGAATGTTGAGGTCATCCCCACGGGCTCTCTGGCTCTTGATATGGCGTTGGGCATTGGTGGCCTT
CCGCGCGGCAGAATCGTCGAGATCTACGGACCTGAGTCTTCCGGCAAGACCACGTTGGCGCTGCACGCTGTGGCCAACGC
GCAGAAGAACGGTGGTGTCGCGGCATATATCGACGCCGAACACGCGCTCGATCCGGTCTATGCCAAGAAGCTAGGCGTCG
ATACAGATTCCCTGATTATCTCCCAGCCGGATAACGGCGAGCAGGCGCTTGAAATCGCGGACATGCTGGTACGCAGCGGC
GCACTTGATATCGTGGTCATCGATTCGGTGGCGGCTTTGGTGCCGAAGGCCGAAATCGAAGGCGAGATGGGCGACAGCCA
TGTCGGTCTGCAGGCCAGGTTGATGAGCCAGGCGTTGCGTAAGATGACCGGTGCATTGGCCCAGTCCAACACCACCGCCA
TCTTCATCAACCAGTTGCGCGAGAAGATCGGTGTCTTCTTCGGCAGTCCAGAGACCACGACCGGTGGCAAGGCCCTGAAG
TTCTATGCTTCCGTGCGTCTCGACATCCGTCGTATCCAGACGTTGAAGAATGGTGACGAGGCCATCGGCAATCGAACCAA
GGTCAAGGTCGTCAAGAACAAGATGGCGCCGCCCTTCAAGTTTGCCGAGTTTGACATTCTCTATGGAGAGGGCATTTCCA
AAGAGGGTTCGGTGCTCGATATGGCCTTGCAGAGCGATGTCGTCAAGAAGTCCGGTTCATGGTTCACCTATGAGGGAGAC
CAACTGGGGCAGGGGCGTGAAAACGTCCGCCAGTTCCTTAAGGATAACCCGGCACTGACCGAGGAAATTGAACGCAAGGT
CAAAGTGAAGTATGGTTTGATTCCCGATGATTCCCAGCCGGCTGACGGTGGGGATGCAGATAAAGGCGAAGGCACTGACT
CGGCGGCCGATGCCAATGGCGATGCCGCGCCCGCTTCTGAATCGGTGTCGAACGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(33-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.396

86.99

0.569
  recA Bacillus subtilis subsp. subtilis str. 168

68.21

82.653

0.564
  recA Acinetobacter baumannii D1279779

67.802

82.398

0.559
  recA Acinetobacter baylyi ADP1

67.492

82.398

0.556
  recA Helicobacter pylori strain NCTC11637

63.158

87.245

0.551
  recA Helicobacter pylori 26695

65.244

83.673

0.546
  recA Streptococcus mutans UA159

59.944

91.071

0.546
  recA Ralstonia pseudosolanacearum GMI1000

67.619

80.357

0.543
  recA Latilactobacillus sakei subsp. sakei 23K

63.363

84.949

0.538
  recA Neisseria gonorrhoeae MS11

66.667

80.357

0.536
  recA Neisseria gonorrhoeae MS11

66.667

80.357

0.536
  recA Neisseria gonorrhoeae strain FA1090

66.667

80.357

0.536
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.526

83.929

0.533
  recA Glaesserella parasuis strain SC1401

60.933

87.5

0.533
  recA Pseudomonas stutzeri DSM 10701

64

82.908

0.531
  recA Streptococcus pyogenes NZ131

63.03

84.184

0.531
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.275

85.204

0.531
  recA Vibrio cholerae strain A1552

62.275

85.204

0.531
  recA Lactococcus lactis subsp. cremoris KW2

62.462

84.949

0.531
  recA Streptococcus mitis NCTC 12261

62.614

83.929

0.526
  recA Streptococcus mitis SK321

62.614

83.929

0.526
  recA Streptococcus pneumoniae R6

62.006

83.929

0.52
  recA Streptococcus pneumoniae TIGR4

62.006

83.929

0.52
  recA Streptococcus pneumoniae D39

62.006

83.929

0.52
  recA Streptococcus pneumoniae Rx1

62.006

83.929

0.52
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.188

81.378

0.49