Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   OZX56_RS06120 Genome accession   NZ_CP113941
Coordinates   1265307..1266416 (-) Length   369 a.a.
NCBI ID   WP_277126193.1    Uniprot ID   -
Organism   Lactobacillus sp. ESL0684     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1260307..1271416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZX56_RS06105 (OZX56_06105) - 1261560..1262216 (+) 657 WP_277139285.1 YigZ family protein -
  OZX56_RS06110 (OZX56_06110) - 1262235..1263395 (-) 1161 WP_277139286.1 MraY family glycosyltransferase -
  OZX56_RS06115 (OZX56_06115) rny 1263550..1265181 (-) 1632 WP_277126194.1 ribonuclease Y -
  OZX56_RS06120 (OZX56_06120) recA 1265307..1266416 (-) 1110 WP_277126193.1 recombinase RecA Machinery gene
  OZX56_RS06125 (OZX56_06125) - 1266537..1267196 (-) 660 WP_277126192.1 ABC transporter permease -
  OZX56_RS06130 (OZX56_06130) - 1267197..1268090 (-) 894 WP_277140360.1 osmoprotectant ABC transporter substrate-binding protein -
  OZX56_RS06135 (OZX56_06135) - 1268147..1268779 (-) 633 WP_277126191.1 ABC transporter permease -
  OZX56_RS06140 (OZX56_06140) - 1268779..1269987 (-) 1209 WP_277126190.1 ABC transporter ATP-binding protein -
  OZX56_RS06145 (OZX56_06145) pgsA 1270120..1270680 (-) 561 WP_277139287.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39777.19 Da        Isoelectric Point: 6.3266

>NTDB_id=763656 OZX56_RS06120 WP_277126193.1 1265307..1266416(-) (recA) [Lactobacillus sp. ESL0684]
MAKDEKQTALDNALKKIEKNFGKGAVMRMGDKANTKISTIPTGSLALDAALGVGGYPRGRIIEAYGPESSGKTTVALHAV
AEVQKRGGTAAYIDAENAMDPAYAEALGVDVDSLILSQPNTGEEGLQIADTLIASGAIDILVVDSVAALVPQAEIDGEMG
DSHVGLQARLMSQALRKLSGNINKTKTIAIFINQIREKVGIMFGNPETTPGGRALKFYATIRLEIRRAEKIKQTGGDITG
NRVKIKVVKNKVAPPFKVAEVDMMYGQGISQSGELLDMAAEKDIIAKAGSWYSYNNDRIGQGRENAKKYLEEHTDVYTEV
EQKVRQAYGIDEDSIAEREDPEKVKAKTAKDETSVKEAAKSEETTKKSK

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=763656 OZX56_RS06120 WP_277126193.1 1265307..1266416(-) (recA) [Lactobacillus sp. ESL0684]
TTGGCCAAAGATGAAAAACAGACTGCATTGGATAATGCACTCAAAAAGATTGAAAAAAATTTTGGTAAAGGTGCCGTAAT
GCGGATGGGTGATAAGGCGAATACCAAGATTTCGACTATCCCAACTGGTTCGTTAGCTCTTGATGCAGCTCTTGGTGTTG
GAGGTTATCCACGCGGAAGGATAATTGAAGCATATGGTCCTGAGTCTTCAGGTAAGACAACAGTAGCTTTACATGCAGTT
GCTGAAGTTCAAAAGCGCGGGGGTACTGCAGCTTATATTGATGCTGAAAATGCCATGGATCCAGCTTATGCTGAAGCTTT
AGGGGTGGATGTTGATTCCTTGATTTTATCACAGCCTAATACTGGTGAAGAAGGACTCCAAATTGCTGATACTTTAATTG
CTAGTGGGGCAATTGACATCTTAGTTGTCGACTCAGTTGCAGCACTAGTTCCGCAAGCCGAAATCGATGGAGAAATGGGC
GATAGCCATGTTGGTTTGCAAGCTCGACTAATGAGTCAGGCCTTACGTAAACTTTCTGGTAATATTAACAAGACTAAGAC
TATTGCTATCTTTATTAACCAAATTCGTGAAAAAGTTGGTATTATGTTTGGTAATCCTGAAACCACACCAGGTGGTCGTG
CATTAAAATTCTATGCTACTATTAGGTTAGAAATTAGACGAGCAGAAAAGATTAAGCAAACAGGCGGCGATATTACTGGT
AATCGCGTTAAAATTAAAGTGGTTAAGAACAAGGTTGCTCCGCCGTTTAAAGTTGCTGAAGTTGACATGATGTATGGTCA
AGGGATTTCTCAAAGTGGGGAGTTACTTGATATGGCAGCTGAAAAGGATATTATTGCTAAAGCTGGTTCATGGTATTCTT
ACAATAATGATCGAATAGGTCAGGGACGTGAAAATGCTAAGAAGTATTTAGAAGAGCATACTGATGTCTATACTGAAGTT
GAACAAAAAGTAAGGCAAGCCTATGGAATTGATGAAGACTCAATTGCAGAACGTGAAGATCCTGAAAAGGTAAAAGCCAA
AACTGCCAAAGATGAGACTTCTGTCAAGGAGGCTGCTAAGTCAGAAGAAACCACCAAAAAAAGCAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

79.217

89.973

0.713
  recA Streptococcus pneumoniae R6

63.812

98.103

0.626
  recA Streptococcus pneumoniae Rx1

63.812

98.103

0.626
  recA Streptococcus pneumoniae D39

63.812

98.103

0.626
  recA Streptococcus pneumoniae TIGR4

63.812

98.103

0.626
  recA Bacillus subtilis subsp. subtilis str. 168

69.184

89.702

0.621
  recA Streptococcus mutans UA159

63.687

97.019

0.618
  recA Streptococcus mitis NCTC 12261

63.662

96.206

0.612
  recA Streptococcus mitis SK321

63.662

96.206

0.612
  recA Streptococcus pyogenes NZ131

68.389

89.16

0.61
  recA Lactococcus lactis subsp. cremoris KW2

67.267

90.244

0.607
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.061

88.889

0.534
  recA Neisseria gonorrhoeae MS11

59.878

89.16

0.534
  recA Neisseria gonorrhoeae MS11

59.878

89.16

0.534
  recA Neisseria gonorrhoeae strain FA1090

59.878

89.16

0.534
  recA Helicobacter pylori 26695

57.434

92.954

0.534
  recA Helicobacter pylori strain NCTC11637

57.434

92.954

0.534
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.765

92.141

0.523
  recA Acinetobacter baylyi ADP1

59.133

87.534

0.518
  recA Acinetobacter baumannii D1279779

59.133

87.534

0.518
  recA Glaesserella parasuis strain SC1401

52.925

97.29

0.515
  recA Pseudomonas stutzeri DSM 10701

58.075

87.263

0.507
  recA Ralstonia pseudosolanacearum GMI1000

59.554

85.095

0.507
  recA Vibrio cholerae strain A1552

57.585

87.534

0.504
  recA Vibrio cholerae O1 biovar El Tor strain E7946

57.585

87.534

0.504
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.276

87.534

0.501