Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   OZX62_RS06695 Genome accession   NZ_CP113939
Coordinates   1675335..1676531 (-) Length   398 a.a.
NCBI ID   WP_277175449.1    Uniprot ID   -
Organism   Bifidobacterium sp. ESL0690     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1670335..1681531
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZX62_RS06680 (OZX62_06680) raiA 1673077..1673769 (-) 693 WP_277175448.1 ribosome-associated translation inhibitor RaiA -
  OZX62_RS06690 (OZX62_06690) - 1674330..1674806 (-) 477 WP_348519307.1 regulatory protein RecX -
  OZX62_RS06695 (OZX62_06695) recA 1675335..1676531 (-) 1197 WP_277175449.1 recombinase RecA Machinery gene
  OZX62_RS06700 (OZX62_06700) - 1676771..1677004 (-) 234 WP_277175450.1 DUF3046 domain-containing protein -
  OZX62_RS06705 (OZX62_06705) - 1677283..1677795 (-) 513 WP_277175451.1 helix-turn-helix transcriptional regulator -
  OZX62_RS06710 (OZX62_06710) - 1677862..1678392 (-) 531 WP_277177057.1 CinA family protein -
  OZX62_RS06715 (OZX62_06715) pgsA 1678604..1679293 (-) 690 WP_277175452.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -

Sequence

Protein


Download         Length: 398 a.a.        Molecular weight: 41774.99 Da        Isoelectric Point: 5.8390

>NTDB_id=763640 OZX62_RS06695 WP_277175449.1 1675335..1676531(-) (recA) [Bifidobacterium sp. ESL0690]
MAQQSKTAKGSKAKNAESQASNGGHGIDPRKQAALDTALKQVEKDFGKGSAMRLGDKPVQNVEVIPTGSLALDMALGIGG
LPRGRIVEIYGPESSGKTTLALHAVANAQKNGGVAAYIDAEHALDPVYAKKLGVDTDSLIISQPDNGEQALEIADMLVRS
GALDVVVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMTGALAQSNTTAIFINQLREKIGVFFGSPETTTGGKAL
KFYASVRLDIRRIQTLKNGDEAVGNRTKVKVVKNKMAPPFKFAEFDILYGEGISREGSVLDMALQCDVVKKSGSWFTYEG
DQLGQGRENVRQFLKDNPALTDEIERKVKIKYGLIEDDSKSDDGGDGAGDSAQSDANSSAGASDGGGSASSSASGSKA

Nucleotide


Download         Length: 1197 bp        

>NTDB_id=763640 OZX62_RS06695 WP_277175449.1 1675335..1676531(-) (recA) [Bifidobacterium sp. ESL0690]
ATGGCACAGCAATCAAAGACTGCGAAAGGCAGCAAAGCCAAGAACGCCGAGTCTCAGGCCAGCAATGGCGGGCATGGCAT
CGATCCGCGCAAGCAGGCGGCGCTCGACACCGCGTTGAAGCAGGTTGAAAAGGACTTCGGCAAGGGCTCGGCGATGCGGC
TTGGCGACAAACCGGTGCAGAACGTCGAGGTCATTCCCACCGGTTCCCTGGCGCTCGATATGGCGCTGGGCATCGGAGGA
TTGCCGCGTGGCAGGATCGTTGAGATCTACGGCCCGGAGTCTTCCGGCAAGACCACGCTTGCGTTGCACGCCGTGGCCAA
CGCGCAGAAAAACGGGGGAGTGGCGGCCTACATCGATGCGGAGCACGCGCTTGATCCGGTATACGCCAAGAAGCTTGGCG
TCGATACGGATTCTCTGATCATTTCCCAGCCCGACAACGGCGAACAGGCCCTCGAAATAGCGGACATGCTGGTGCGCAGT
GGCGCGCTTGATGTCGTAGTGATTGATTCGGTGGCGGCTTTGGTGCCGAAGGCCGAAATCGAAGGTGAGATGGGCGACAG
CCACGTCGGCCTGCAGGCTCGTTTGATGAGCCAGGCGCTGCGTAAGATGACCGGCGCGTTGGCCCAGTCCAATACCACCG
CTATCTTCATCAACCAGCTGCGTGAGAAGATCGGTGTCTTCTTCGGCAGCCCGGAGACGACCACCGGTGGCAAGGCATTA
AAGTTCTATGCTTCGGTGCGTCTCGACATCCGCCGTATCCAGACGTTGAAGAACGGTGACGAGGCCGTTGGCAACCGCAC
CAAAGTCAAGGTCGTCAAGAACAAGATGGCGCCGCCGTTCAAGTTCGCGGAGTTCGACATTCTCTACGGCGAGGGTATCT
CCAGGGAGGGCTCCGTGCTCGATATGGCGCTGCAGTGCGATGTCGTCAAGAAGTCCGGTTCCTGGTTCACCTATGAGGGT
GATCAGCTGGGGCAAGGGCGTGAGAACGTCCGCCAGTTCCTCAAAGACAATCCGGCTTTGACAGACGAGATTGAGCGTAA
GGTCAAGATTAAGTATGGTCTGATCGAAGATGATTCCAAGTCTGATGACGGTGGGGATGGAGCCGGCGACTCGGCCCAGT
CCGATGCCAACAGCAGTGCCGGTGCTTCTGATGGTGGCGGCAGTGCCTCGTCGTCTGCGTCGGGTTCGAAAGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(34-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

67.593

81.407

0.55
  recA Acinetobacter baumannii D1279779

67.802

81.156

0.55
  recA Acinetobacter baylyi ADP1

67.183

81.156

0.545
  recA Ralstonia pseudosolanacearum GMI1000

68.371

78.643

0.538
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.443

82.161

0.538
  recA Pseudomonas stutzeri DSM 10701

63.284

84.171

0.533
  recA Helicobacter pylori 26695

65.432

81.407

0.533
  recA Helicobacter pylori strain NCTC11637

65.432

81.407

0.533
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.83

82.663

0.528
  recA Neisseria gonorrhoeae strain FA1090

67.742

77.889

0.528
  recA Neisseria gonorrhoeae MS11

67.742

77.889

0.528
  recA Neisseria gonorrhoeae MS11

67.742

77.889

0.528
  recA Latilactobacillus sakei subsp. sakei 23K

64.506

81.407

0.525
  recA Streptococcus mitis NCTC 12261

59.714

87.94

0.525
  recA Streptococcus mutans UA159

62.202

84.422

0.525
  recA Glaesserella parasuis strain SC1401

64.198

81.407

0.523
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.396

81.156

0.523
  recA Vibrio cholerae strain A1552

64.396

81.156

0.523
  recA Streptococcus pyogenes NZ131

63.03

82.915

0.523
  recA Streptococcus pneumoniae TIGR4

59.312

87.688

0.52
  recA Streptococcus pneumoniae Rx1

59.312

87.688

0.52
  recA Streptococcus pneumoniae D39

59.312

87.688

0.52
  recA Streptococcus pneumoniae R6

59.312

87.688

0.52
  recA Lactococcus lactis subsp. cremoris KW2

62.5

82.412

0.515
  recA Streptococcus mitis SK321

62.121

82.915

0.515
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.815

80.151

0.487