Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   OZX64_RS03435 Genome accession   NZ_CP113929
Coordinates   1001786..1002979 (+) Length   397 a.a.
NCBI ID   WP_277174805.1    Uniprot ID   -
Organism   Bifidobacterium sp. ESL0704     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 996786..1007979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZX64_RS03410 (OZX64_03420) pgsA 999033..999722 (+) 690 WP_277174801.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  OZX64_RS03415 (OZX64_03425) - 999918..1000475 (+) 558 WP_277174962.1 nicotinamide-nucleotide amidohydrolase family protein -
  OZX64_RS03420 (OZX64_03430) - 1000541..1001053 (+) 513 WP_277174802.1 helix-turn-helix transcriptional regulator -
  OZX64_RS03425 (OZX64_03435) - 1001091..1001276 (-) 186 WP_277174803.1 hypothetical protein -
  OZX64_RS03430 (OZX64_03440) - 1001323..1001556 (+) 234 WP_277174804.1 DUF3046 domain-containing protein -
  OZX64_RS03435 (OZX64_03445) recA 1001786..1002979 (+) 1194 WP_277174805.1 recombinase RecA Machinery gene
  OZX64_RS08880 - 1003433..1003918 (+) 486 Protein_669 regulatory protein RecX -
  OZX64_RS03450 (OZX64_03460) raiA 1004653..1005345 (+) 693 WP_277156072.1 ribosome-associated translation inhibitor RaiA -

Sequence

Protein


Download         Length: 397 a.a.        Molecular weight: 42071.45 Da        Isoelectric Point: 5.3707

>NTDB_id=763587 OZX64_RS03435 WP_277174805.1 1001786..1002979(+) (recA) [Bifidobacterium sp. ESL0704]
MAQQSKTAKGGKAKNAAPQANGEHGIDPRKQAALDTALKQVEKDFGKGSAMRLGDKPVQNVEVIPTGSLALDMALGIGGL
PRGRIVEIYGPESSGKTTLALHAVANAQKAGGVAAYIDAEHALDPVYAKKLGVDTDQLIISQPDNGEQALEIADMLVRSG
ALDVVVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMTGALAQSNTTAIFINQLREKIGVFFGSPETTTGGKALK
FYASVRLDIRRIQTLKNGDEAVGNRTKVKVVKNKMAPPFKFAEFDILYGEGISREGSVLDMAIQCDVVKKSGSWFTYEGD
QLGQGRENVRQFLKDNPALTDEIERKVKIKYGLIEDDSKPDDGGDASQDSDSSDAGAAADSTEAREDGRSSGSGPKA

Nucleotide


Download         Length: 1194 bp        

>NTDB_id=763587 OZX64_RS03435 WP_277174805.1 1001786..1002979(+) (recA) [Bifidobacterium sp. ESL0704]
ATGGCACAGCAATCAAAAACCGCTAAGGGCGGCAAAGCCAAGAACGCCGCGCCCCAGGCCAACGGCGAGCACGGCATCGA
CCCACGCAAGCAGGCGGCGCTCGATACCGCGCTGAAACAAGTCGAAAAAGATTTCGGCAAAGGTTCCGCGATGCGCCTTG
GCGACAAGCCCGTGCAGAACGTCGAAGTCATCCCTACAGGTTCCCTGGCTCTTGATATGGCGCTGGGGATCGGAGGTCTG
CCGCGCGGCAGGATTGTAGAGATTTACGGTCCGGAATCGTCCGGCAAGACCACGCTGGCGTTGCATGCAGTGGCCAATGC
GCAGAAAGCCGGTGGCGTGGCGGCCTATATCGATGCGGAACATGCGCTCGATCCGGTTTACGCCAAGAAGCTCGGTGTCG
ATACGGACCAATTGATTATTTCCCAGCCCGATAACGGCGAGCAGGCTCTTGAGATCGCGGATATGCTGGTGCGCAGCGGT
GCGCTGGATGTCGTGGTCATCGATTCGGTCGCGGCTTTGGTGCCCAAGGCCGAAATCGAAGGTGAGATGGGCGACAGCCA
TGTCGGTCTGCAGGCCCGTTTGATGAGCCAGGCGTTGCGTAAGATGACCGGTGCGTTGGCCCAGTCCAATACCACCGCCA
TTTTCATCAACCAGTTGCGTGAGAAAATCGGTGTCTTCTTCGGCAGCCCGGAAACGACGACCGGTGGCAAGGCGCTGAAA
TTCTATGCCTCGGTGCGTCTCGACATCCGTCGAATCCAGACGTTGAAGAACGGTGACGAGGCGGTCGGCAACCGCACCAA
GGTCAAGGTCGTCAAAAACAAGATGGCTCCGCCCTTCAAGTTCGCCGAGTTCGACATCCTCTACGGGGAGGGCATCTCCC
GTGAGGGTTCCGTGCTCGATATGGCAATCCAATGCGATGTCGTCAAGAAGTCTGGCTCCTGGTTCACTTATGAGGGCGAC
CAGCTGGGGCAGGGGCGCGAGAACGTTCGCCAGTTCCTCAAAGACAATCCGGCGCTGACCGACGAGATCGAGCGCAAGGT
GAAGATCAAATACGGTCTGATCGAAGACGATTCCAAGCCCGATGACGGCGGCGACGCTTCGCAGGATTCCGATTCGTCTG
ATGCCGGTGCCGCTGCTGATTCGACCGAGGCTCGCGAAGATGGCCGGTCCTCGGGTTCGGGTCCGAAAGCCTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(33-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

65.407

86.65

0.567
  recA Bacillus subtilis subsp. subtilis str. 168

67.593

81.612

0.552
  recA Acinetobacter baylyi ADP1

67.492

81.36

0.549
  recA Ralstonia pseudosolanacearum GMI1000

68.371

78.841

0.539
  recA Pseudomonas stutzeri DSM 10701

61.85

87.154

0.539
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.443

82.368

0.539
  recA Glaesserella parasuis strain SC1401

61.032

87.909

0.537
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.134

82.872

0.531
  recA Helicobacter pylori 26695

65.123

81.612

0.531
  recA Helicobacter pylori strain NCTC11637

65.123

81.612

0.531
  recA Streptococcus mutans UA159

60.172

87.909

0.529
  recA Latilactobacillus sakei subsp. sakei 23K

64.506

81.612

0.526
  recA Neisseria gonorrhoeae strain FA1090

67.419

78.086

0.526
  recA Neisseria gonorrhoeae MS11

67.419

78.086

0.526
  recA Neisseria gonorrhoeae MS11

67.419

78.086

0.526
  recA Vibrio cholerae strain A1552

64.396

81.36

0.524
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.396

81.36

0.524
  recA Streptococcus pyogenes NZ131

63.03

83.123

0.524
  recA Streptococcus mitis NCTC 12261

59.942

87.406

0.524
  recA Streptococcus mitis SK321

59.654

87.406

0.521
  recA Lactococcus lactis subsp. cremoris KW2

62.5

82.62

0.516
  recA Streptococcus pneumoniae Rx1

62.121

83.123

0.516
  recA Streptococcus pneumoniae D39

62.121

83.123

0.516
  recA Streptococcus pneumoniae R6

62.121

83.123

0.516
  recA Streptococcus pneumoniae TIGR4

62.121

83.123

0.516
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.129

80.353

0.491