Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | OZX67_RS06440 | Genome accession | NZ_CP113925 |
| Coordinates | 1654461..1655657 (-) | Length | 398 a.a. |
| NCBI ID | WP_277141880.1 | Uniprot ID | - |
| Organism | Bifidobacterium sp. ESL0728 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1648802..1738985 | 1654461..1655657 | within | 0 |
Gene organization within MGE regions
Location: 1648802..1738985
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OZX67_RS06425 (OZX67_06425) | raiA | 1651964..1652656 (-) | 693 | WP_277141879.1 | ribosome-associated translation inhibitor RaiA | - |
| OZX67_RS06435 (OZX67_06435) | - | 1653441..1653935 (-) | 495 | WP_348519622.1 | regulatory protein RecX | - |
| OZX67_RS06440 (OZX67_06440) | recA | 1654461..1655657 (-) | 1197 | WP_277141880.1 | recombinase RecA | Machinery gene |
| OZX67_RS06445 (OZX67_06445) | - | 1655890..1656123 (-) | 234 | WP_277141881.1 | DUF3046 domain-containing protein | - |
| OZX67_RS06450 (OZX67_06450) | - | 1656344..1656856 (-) | 513 | WP_277144977.1 | helix-turn-helix transcriptional regulator | - |
| OZX67_RS06455 (OZX67_06455) | - | 1656923..1657453 (-) | 531 | WP_277144980.1 | CinA family protein | - |
| OZX67_RS06460 (OZX67_06460) | pgsA | 1657662..1658351 (-) | 690 | WP_277141882.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| OZX67_RS06465 (OZX67_06465) | - | 1658441..1661335 (-) | 2895 | WP_277141883.1 | DNA translocase FtsK | - |
| OZX67_RS06470 (OZX67_06470) | - | 1661614..1662609 (+) | 996 | WP_277141884.1 | Fic family protein | - |
| OZX67_RS06475 (OZX67_06475) | miaA | 1662775..1663782 (-) | 1008 | WP_277144983.1 | tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA | - |
| OZX67_RS06480 (OZX67_06480) | - | 1663914..1664678 (+) | 765 | WP_277141885.1 | GTP pyrophosphokinase family protein | - |
| OZX67_RS06485 (OZX67_06485) | - | 1664853..1665803 (+) | 951 | WP_277141886.1 | Bax inhibitor-1 family protein | - |
| OZX67_RS06490 (OZX67_06490) | - | 1665982..1666866 (-) | 885 | WP_277141887.1 | Ltp family lipoprotein | - |
| OZX67_RS06495 (OZX67_06495) | - | 1667080..1668471 (+) | 1392 | WP_277141888.1 | sensor histidine kinase | - |
| OZX67_RS06500 (OZX67_06500) | - | 1668654..1669343 (+) | 690 | WP_277141889.1 | response regulator transcription factor | - |
| OZX67_RS06505 (OZX67_06505) | acnA | 1669428..1672220 (-) | 2793 | WP_277141890.1 | aconitate hydratase AcnA | - |
| OZX67_RS06510 (OZX67_06510) | - | 1672595..1675279 (-) | 2685 | WP_277141891.1 | HAD-IC family P-type ATPase | - |
| OZX67_RS06515 (OZX67_06515) | - | 1675456..1676031 (-) | 576 | WP_277141892.1 | hypothetical protein | - |
| OZX67_RS06520 (OZX67_06520) | - | 1676045..1677343 (-) | 1299 | WP_277141893.1 | TRAM domain-containing protein | - |
| OZX67_RS06525 (OZX67_06525) | - | 1677621..1678415 (-) | 795 | WP_277141894.1 | DUF3159 domain-containing protein | - |
| OZX67_RS06530 (OZX67_06530) | - | 1678570..1679511 (-) | 942 | WP_277141895.1 | DUF3710 domain-containing protein | - |
| OZX67_RS06535 (OZX67_06535) | - | 1679608..1680474 (-) | 867 | WP_277141896.1 | exodeoxyribonuclease III | - |
| OZX67_RS06540 (OZX67_06540) | - | 1680611..1682635 (-) | 2025 | WP_277141897.1 | ABC transporter ATP-binding protein | - |
| OZX67_RS06545 (OZX67_06545) | - | 1682653..1683618 (-) | 966 | WP_277144985.1 | ABC transporter permease | - |
| OZX67_RS06550 (OZX67_06550) | - | 1683647..1684573 (-) | 927 | WP_277141898.1 | ABC transporter permease | - |
| OZX67_RS06555 (OZX67_06555) | - | 1684775..1686412 (-) | 1638 | WP_277141899.1 | ABC transporter substrate-binding protein | - |
| OZX67_RS06560 (OZX67_06560) | - | 1686783..1688432 (-) | 1650 | WP_277141900.1 | ABC transporter substrate-binding protein | - |
| OZX67_RS06565 (OZX67_06565) | - | 1688627..1689793 (-) | 1167 | WP_277141901.1 | tyrosine recombinase XerC | - |
| OZX67_RS06570 (OZX67_06570) | - | 1690027..1690302 (+) | 276 | WP_277141902.1 | DUF6725 family protein | - |
| OZX67_RS06575 (OZX67_06575) | - | 1690776..1691615 (-) | 840 | Protein_1279 | prephenate dehydrogenase/arogenate dehydrogenase family protein | - |
| OZX67_RS09650 | - | 1691813..1692406 (-) | 594 | Protein_1280 | prephenate dehydratase domain-containing protein | - |
| OZX67_RS09655 | - | 1692620..1692973 (-) | 354 | Protein_1281 | prephenate dehydratase domain-containing protein | - |
| OZX67_RS06585 (OZX67_06585) | - | 1692970..1693542 (-) | 573 | WP_277141903.1 | alcohol dehydrogenase | - |
| OZX67_RS06590 (OZX67_06590) | typA | 1693804..1695732 (-) | 1929 | WP_277141904.1 | translational GTPase TypA | - |
| OZX67_RS06595 (OZX67_06595) | - | 1695930..1696748 (-) | 819 | WP_277144987.1 | NUDIX hydrolase | - |
| OZX67_RS06600 (OZX67_06600) | - | 1696925..1698295 (-) | 1371 | WP_277141905.1 | MFS transporter | - |
| OZX67_RS06605 (OZX67_06605) | scpB | 1698456..1699061 (-) | 606 | WP_277144989.1 | SMC-Scp complex subunit ScpB | - |
| OZX67_RS06610 (OZX67_06610) | - | 1699277..1700128 (-) | 852 | WP_277144991.1 | ScpA family protein | - |
| OZX67_RS06615 (OZX67_06615) | - | 1700360..1701199 (-) | 840 | WP_277144993.1 | AAA family ATPase | - |
| OZX67_RS06620 (OZX67_06620) | xerD | 1701698..1702705 (-) | 1008 | WP_277141906.1 | site-specific tyrosine recombinase XerD | - |
| OZX67_RS06625 (OZX67_06625) | - | 1703080..1704981 (-) | 1902 | WP_277141907.1 | isopeptide-forming domain-containing fimbrial protein | - |
| OZX67_RS06630 (OZX67_06630) | - | 1705139..1707718 (-) | 2580 | WP_277141908.1 | hypothetical protein | - |
| OZX67_RS06635 (OZX67_06635) | - | 1708061..1709107 (-) | 1047 | WP_277141909.1 | class C sortase | - |
| OZX67_RS06640 (OZX67_06640) | rplT | 1709365..1709748 (-) | 384 | WP_277141910.1 | 50S ribosomal protein L20 | - |
| OZX67_RS06645 (OZX67_06645) | rpmI | 1709803..1709997 (-) | 195 | WP_277141911.1 | 50S ribosomal protein L35 | - |
| OZX67_RS06650 (OZX67_06650) | infC | 1710341..1711003 (-) | 663 | Protein_1295 | translation initiation factor IF-3 | - |
| OZX67_RS06655 (OZX67_06655) | - | 1711339..1712196 (+) | 858 | WP_277141912.1 | thiamine diphosphokinase | - |
| OZX67_RS06660 (OZX67_06660) | - | 1712549..1712920 (+) | 372 | WP_348519623.1 | arsenate reductase family protein | - |
| OZX67_RS06665 (OZX67_06665) | gap | 1712991..1714046 (+) | 1056 | WP_277141914.1 | type I glyceraldehyde-3-phosphate dehydrogenase | - |
| OZX67_RS06670 (OZX67_06670) | ybaK | 1714299..1714811 (+) | 513 | WP_277141915.1 | Cys-tRNA(Pro) deacylase | - |
Sequence
Protein
Download Length: 398 a.a. Molecular weight: 41889.44 Da Isoelectric Point: 5.8503
>NTDB_id=763554 OZX67_RS06440 WP_277141880.1 1654461..1655657(-) (recA) [Bifidobacterium sp. ESL0728]
MAQQSKTAKGGKAKNAEPKANGEHGIDPRKQAALDTALKQVEKDFGKGSAMRLGDKPVQNVEVIPTGSLALDMALGIGGL
PRGRIVEIYGPESSGKTTLALHAVANAQKAGGVAAYIDAEHALDPVYAKKLGVDTDQLIISQPDNGEQALEIADMLVRSG
ALDVVVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMTGALAQSNTTAIFINQLREKIGVFFGSPETTTGGKALK
FYASVRLDIRRIQTLKNGDEAIGNRTKVKVVKNKMAPPFKFAEFDILYGEGISKEGSVLDMALQCDVVKKSGSWFTYEGD
QLGQGRENVRQFLKDNPALTDEIERKVKIKYGLIPDDSKPADGGDGEAADPAPADAKGGAGASDGEGNASSSDSGSKV
MAQQSKTAKGGKAKNAEPKANGEHGIDPRKQAALDTALKQVEKDFGKGSAMRLGDKPVQNVEVIPTGSLALDMALGIGGL
PRGRIVEIYGPESSGKTTLALHAVANAQKAGGVAAYIDAEHALDPVYAKKLGVDTDQLIISQPDNGEQALEIADMLVRSG
ALDVVVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMTGALAQSNTTAIFINQLREKIGVFFGSPETTTGGKALK
FYASVRLDIRRIQTLKNGDEAIGNRTKVKVVKNKMAPPFKFAEFDILYGEGISKEGSVLDMALQCDVVKKSGSWFTYEGD
QLGQGRENVRQFLKDNPALTDEIERKVKIKYGLIPDDSKPADGGDGEAADPAPADAKGGAGASDGEGNASSSDSGSKV
Nucleotide
Download Length: 1197 bp
>NTDB_id=763554 OZX67_RS06440 WP_277141880.1 1654461..1655657(-) (recA) [Bifidobacterium sp. ESL0728]
ATGGCACAGCAATCAAAGACCGCGAAAGGCGGCAAAGCCAAGAACGCCGAGCCCAAGGCCAACGGTGAGCACGGCATCGA
TCCGCGCAAGCAAGCCGCGCTTGATACCGCGTTGAAGCAGGTTGAAAAGGACTTCGGCAAAGGTTCCGCGATGCGGCTTG
GCGACAAGCCCGTACAGAACGTCGAAGTCATTCCCACGGGTTCGCTGGCACTTGATATGGCGCTGGGAATCGGGGGGCTG
CCGCGTGGCAGGATCGTTGAGATCTACGGCCCCGAGTCTTCCGGCAAGACCACGTTGGCGCTGCATGCGGTGGCCAACGC
TCAGAAGGCCGGGGGAGTGGCCGCCTACATCGATGCGGAACACGCGCTCGACCCGGTCTATGCCAAGAAGCTTGGCGTCG
ATACGGATCAGTTGATCATCTCCCAGCCGGACAACGGCGAGCAGGCGCTTGAGATCGCGGACATGCTGGTGCGCAGCGGC
GCTCTGGATGTCGTGGTCATCGATTCGGTGGCGGCTTTGGTCCCGAAGGCCGAAATCGAAGGCGAGATGGGCGACAGCCA
CGTCGGCCTGCAGGCCAGGCTCATGAGCCAGGCGCTGCGCAAGATGACCGGTGCGCTGGCCCAGTCCAACACTACCGCCA
TCTTCATCAACCAGCTGCGTGAGAAGATCGGTGTCTTCTTCGGCAGCCCGGAGACCACCACCGGCGGCAAGGCGTTGAAG
TTCTATGCCTCCGTGCGTCTTGACATCCGTCGTATCCAGACCTTGAAGAACGGTGACGAGGCCATCGGCAACCGCACCAA
GGTCAAGGTCGTCAAGAACAAGATGGCTCCGCCCTTCAAGTTCGCCGAGTTCGACATTCTTTACGGGGAGGGCATCTCCA
AAGAGGGTTCCGTGCTCGATATGGCCTTGCAGTGCGATGTCGTCAAGAAGTCCGGTTCTTGGTTCACCTACGAGGGCGAC
CAGCTGGGGCAGGGGCGTGAGAACGTCCGCCAGTTCCTCAAAGACAATCCGGCGCTGACCGACGAGATCGAACGCAAGGT
CAAGATCAAGTACGGCCTTATTCCTGATGATTCCAAGCCGGCTGACGGTGGCGATGGCGAAGCTGCCGACCCGGCTCCGG
CCGATGCCAAGGGCGGGGCCGGTGCTTCTGATGGCGAAGGCAACGCCTCGTCATCAGATTCGGGCTCGAAAGTCTGA
ATGGCACAGCAATCAAAGACCGCGAAAGGCGGCAAAGCCAAGAACGCCGAGCCCAAGGCCAACGGTGAGCACGGCATCGA
TCCGCGCAAGCAAGCCGCGCTTGATACCGCGTTGAAGCAGGTTGAAAAGGACTTCGGCAAAGGTTCCGCGATGCGGCTTG
GCGACAAGCCCGTACAGAACGTCGAAGTCATTCCCACGGGTTCGCTGGCACTTGATATGGCGCTGGGAATCGGGGGGCTG
CCGCGTGGCAGGATCGTTGAGATCTACGGCCCCGAGTCTTCCGGCAAGACCACGTTGGCGCTGCATGCGGTGGCCAACGC
TCAGAAGGCCGGGGGAGTGGCCGCCTACATCGATGCGGAACACGCGCTCGACCCGGTCTATGCCAAGAAGCTTGGCGTCG
ATACGGATCAGTTGATCATCTCCCAGCCGGACAACGGCGAGCAGGCGCTTGAGATCGCGGACATGCTGGTGCGCAGCGGC
GCTCTGGATGTCGTGGTCATCGATTCGGTGGCGGCTTTGGTCCCGAAGGCCGAAATCGAAGGCGAGATGGGCGACAGCCA
CGTCGGCCTGCAGGCCAGGCTCATGAGCCAGGCGCTGCGCAAGATGACCGGTGCGCTGGCCCAGTCCAACACTACCGCCA
TCTTCATCAACCAGCTGCGTGAGAAGATCGGTGTCTTCTTCGGCAGCCCGGAGACCACCACCGGCGGCAAGGCGTTGAAG
TTCTATGCCTCCGTGCGTCTTGACATCCGTCGTATCCAGACCTTGAAGAACGGTGACGAGGCCATCGGCAACCGCACCAA
GGTCAAGGTCGTCAAGAACAAGATGGCTCCGCCCTTCAAGTTCGCCGAGTTCGACATTCTTTACGGGGAGGGCATCTCCA
AAGAGGGTTCCGTGCTCGATATGGCCTTGCAGTGCGATGTCGTCAAGAAGTCCGGTTCTTGGTTCACCTACGAGGGCGAC
CAGCTGGGGCAGGGGCGTGAGAACGTCCGCCAGTTCCTCAAAGACAATCCGGCGCTGACCGACGAGATCGAACGCAAGGT
CAAGATCAAGTACGGCCTTATTCCTGATGATTCCAAGCCGGCTGACGGTGGCGATGGCGAAGCTGCCGACCCGGCTCCGG
CCGATGCCAAGGGCGGGGCCGGTGCTTCTGATGGCGAAGGCAACGCCTCGTCATCAGATTCGGGCTCGAAAGTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.