Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | OZX70_RS06015 | Genome accession | NZ_CP113920 |
| Coordinates | 1549381..1550553 (-) | Length | 390 a.a. |
| NCBI ID | WP_277179888.1 | Uniprot ID | - |
| Organism | Bifidobacterium sp. ESL0732 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1549610..1625735 | 1549381..1550553 | flank | -943 |
Gene organization within MGE regions
Location: 1549381..1625735
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OZX70_RS06015 (OZX70_06015) | recA | 1549381..1550553 (-) | 1173 | WP_277179888.1 | recombinase RecA | Machinery gene |
| OZX70_RS06020 (OZX70_06020) | - | 1550789..1551022 (-) | 234 | WP_277175450.1 | DUF3046 domain-containing protein | - |
| OZX70_RS06025 (OZX70_06025) | - | 1551140..1551652 (-) | 513 | WP_277179890.1 | helix-turn-helix transcriptional regulator | - |
| OZX70_RS06030 (OZX70_06030) | - | 1551719..1552249 (-) | 531 | WP_277182131.1 | nicotinamide-nucleotide amidohydrolase family protein | - |
| OZX70_RS06035 (OZX70_06035) | pgsA | 1552461..1553150 (-) | 690 | WP_277179892.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| OZX70_RS06040 (OZX70_06040) | - | 1553188..1556076 (-) | 2889 | WP_277179894.1 | DNA translocase FtsK 4TM domain-containing protein | - |
| OZX70_RS06045 (OZX70_06045) | - | 1556187..1557110 (+) | 924 | WP_277179896.1 | Fic family protein | - |
| OZX70_RS06050 (OZX70_06050) | miaA | 1557179..1558231 (-) | 1053 | WP_277179898.1 | tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA | - |
| OZX70_RS06055 (OZX70_06055) | - | 1558364..1559128 (+) | 765 | WP_277179900.1 | GTP pyrophosphokinase family protein | - |
| OZX70_RS06060 (OZX70_06060) | - | 1559315..1560277 (+) | 963 | WP_277179902.1 | Bax inhibitor-1/YccA family protein | - |
| OZX70_RS06065 (OZX70_06065) | acnA | 1560400..1563117 (-) | 2718 | WP_277179904.1 | aconitate hydratase AcnA | - |
| OZX70_RS06070 (OZX70_06070) | - | 1563439..1566117 (-) | 2679 | WP_277179906.1 | HAD-IC family P-type ATPase | - |
| OZX70_RS06075 (OZX70_06075) | - | 1566293..1566868 (-) | 576 | WP_277179908.1 | hypothetical protein | - |
| OZX70_RS06080 (OZX70_06080) | - | 1566883..1568181 (-) | 1299 | WP_277179910.1 | RNA methyltransferase | - |
| OZX70_RS06085 (OZX70_06085) | - | 1568322..1569119 (-) | 798 | WP_277179912.1 | DUF3159 domain-containing protein | - |
| OZX70_RS06090 (OZX70_06090) | - | 1569229..1570161 (-) | 933 | WP_277179914.1 | DUF3710 domain-containing protein | - |
| OZX70_RS06095 (OZX70_06095) | - | 1570358..1571452 (-) | 1095 | WP_277179916.1 | LacI family DNA-binding transcriptional regulator | - |
| OZX70_RS06100 (OZX70_06100) | - | 1571792..1573309 (+) | 1518 | WP_277179919.1 | sugar ABC transporter ATP-binding protein | - |
| OZX70_RS06105 (OZX70_06105) | - | 1573302..1574297 (+) | 996 | WP_277179921.1 | ABC transporter permease | - |
| OZX70_RS06110 (OZX70_06110) | - | 1574535..1575638 (+) | 1104 | WP_277179923.1 | substrate-binding domain-containing protein | - |
| OZX70_RS06115 (OZX70_06115) | - | 1575769..1576182 (+) | 414 | WP_277179925.1 | VOC family protein | - |
| OZX70_RS06120 (OZX70_06120) | - | 1576268..1577134 (-) | 867 | WP_277179927.1 | exodeoxyribonuclease III | - |
| OZX70_RS06125 (OZX70_06125) | - | 1577266..1579290 (-) | 2025 | WP_277179929.1 | ABC transporter ATP-binding protein | - |
| OZX70_RS06130 (OZX70_06130) | - | 1579308..1580285 (-) | 978 | WP_277179931.1 | ABC transporter permease | - |
| OZX70_RS06135 (OZX70_06135) | - | 1580303..1581229 (-) | 927 | WP_277179933.1 | ABC transporter permease | - |
| OZX70_RS06140 (OZX70_06140) | - | 1581429..1583060 (-) | 1632 | WP_277179934.1 | ABC transporter substrate-binding protein | - |
| OZX70_RS06145 (OZX70_06145) | - | 1583416..1585062 (-) | 1647 | WP_277179936.1 | ABC transporter substrate-binding protein | - |
| OZX70_RS06150 (OZX70_06150) | xerA | 1585261..1586175 (-) | 915 | WP_277179938.1 | site-specific tyrosine recombinase/integron integrase | - |
| OZX70_RS06155 (OZX70_06155) | - | 1586401..1586658 (+) | 258 | WP_277179940.1 | DUF6725 family protein | - |
| OZX70_RS06160 (OZX70_06160) | - | 1586670..1587686 (-) | 1017 | WP_277179942.1 | prephenate dehydrogenase/arogenate dehydrogenase family protein | - |
| OZX70_RS06165 (OZX70_06165) | - | 1587680..1588729 (-) | 1050 | WP_277179944.1 | prephenate dehydratase domain-containing protein | - |
| OZX70_RS06170 (OZX70_06170) | - | 1588726..1589250 (-) | 525 | WP_277179946.1 | alcohol dehydrogenase | - |
| OZX70_RS06175 (OZX70_06175) | typA | 1589405..1591333 (-) | 1929 | WP_277179948.1 | translational GTPase TypA | - |
| OZX70_RS06180 (OZX70_06180) | - | 1591586..1592404 (-) | 819 | WP_277179950.1 | NUDIX domain-containing protein | - |
| OZX70_RS06185 (OZX70_06185) | scpB | 1592511..1593188 (-) | 678 | WP_277182132.1 | SMC-Scp complex subunit ScpB | - |
| OZX70_RS06190 (OZX70_06190) | - | 1593338..1594162 (-) | 825 | WP_277179952.1 | segregation/condensation protein A | - |
| OZX70_RS06195 (OZX70_06195) | - | 1594181..1595020 (-) | 840 | WP_277182133.1 | AAA family ATPase | - |
| OZX70_RS06200 (OZX70_06200) | xerD | 1595338..1596258 (-) | 921 | WP_277179954.1 | site-specific tyrosine recombinase XerD | - |
| OZX70_RS06205 (OZX70_06205) | - | 1596537..1598555 (-) | 2019 | WP_277179956.1 | isopeptide-forming domain-containing fimbrial protein | - |
| OZX70_RS06210 (OZX70_06210) | - | 1598709..1601330 (-) | 2622 | WP_277179959.1 | hypothetical protein | - |
| OZX70_RS06215 (OZX70_06215) | - | 1601537..1602652 (-) | 1116 | WP_277179961.1 | class C sortase | - |
| OZX70_RS06220 (OZX70_06220) | rplT | 1602763..1603146 (-) | 384 | WP_277179963.1 | 50S ribosomal protein L20 | - |
| OZX70_RS06225 (OZX70_06225) | rpmI | 1603201..1603395 (-) | 195 | WP_277151572.1 | 50S ribosomal protein L35 | - |
| OZX70_RS06230 (OZX70_06230) | infC | 1603745..1604425 (-) | 681 | Protein_1201 | translation initiation factor IF-3 | - |
| OZX70_RS06235 (OZX70_06235) | - | 1604781..1605305 (-) | 525 | WP_348519427.1 | GNAT family N-acetyltransferase | - |
| OZX70_RS06240 (OZX70_06240) | - | 1605407..1605775 (-) | 369 | WP_277179965.1 | VOC family protein | - |
| OZX70_RS06245 (OZX70_06245) | - | 1605970..1606719 (+) | 750 | WP_277179967.1 | thiamine diphosphokinase | - |
| OZX70_RS06250 (OZX70_06250) | - | 1606879..1607250 (+) | 372 | WP_348519444.1 | arsenate reductase family protein | - |
| OZX70_RS06255 (OZX70_06255) | gap | 1607320..1608375 (+) | 1056 | WP_277147295.1 | type I glyceraldehyde-3-phosphate dehydrogenase | - |
| OZX70_RS06260 (OZX70_06260) | ybaK | 1608620..1609129 (+) | 510 | WP_277179971.1 | Cys-tRNA(Pro) deacylase | - |
| OZX70_RS06265 (OZX70_06265) | - | 1609523..1610473 (+) | 951 | WP_277179973.1 | aldose 1-epimerase family protein | - |
| OZX70_RS06270 (OZX70_06270) | - | 1610741..1611034 (-) | 294 | WP_277179975.1 | hypothetical protein | - |
| OZX70_RS06275 (OZX70_06275) | - | 1611161..1611751 (-) | 591 | WP_277182135.1 | sigma-70 family RNA polymerase sigma factor | - |
| OZX70_RS06280 (OZX70_06280) | - | 1612067..1612831 (+) | 765 | WP_277179977.1 | exonuclease domain-containing protein | - |
| OZX70_RS06285 (OZX70_06285) | - | 1613054..1614616 (+) | 1563 | WP_277179979.1 | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase | - |
| OZX70_RS06290 (OZX70_06290) | - | 1614671..1615915 (+) | 1245 | WP_277179980.1 | carboxylate--amine ligase | - |
| OZX70_RS06295 (OZX70_06295) | - | 1615912..1616643 (+) | 732 | WP_277179983.1 | amino acid racemase | - |
| OZX70_RS06300 (OZX70_06300) | - | 1616850..1618016 (-) | 1167 | WP_277179985.1 | glycerate kinase | - |
| OZX70_RS06305 (OZX70_06305) | smc | 1618398..1622099 (-) | 3702 | WP_277179987.1 | chromosome segregation protein SMC | - |
| OZX70_RS06310 (OZX70_06310) | - | 1622401..1624044 (-) | 1644 | WP_277179989.1 | folylpolyglutamate synthase/dihydrofolate synthase family protein | - |
Sequence
Protein
Download Length: 390 a.a. Molecular weight: 41180.63 Da Isoelectric Point: 5.8432
>NTDB_id=763534 OZX70_RS06015 WP_277179888.1 1549381..1550553(-) (recA) [Bifidobacterium sp. ESL0732]
MAQQSKTAKGGKAKSAEPQGNGGHGIDPRKQAALDTALKQVEKDFGKGSAMRLGDKPVQNVEVIPTGSLALDMALGIGGL
PRGRIVEIYGPESSGKTTLALHAVANAQKNGGVAAYIDAEHALDPVYAKKLGVDTDSLIISQPDNGEQALEIADMLVRSG
ALDVVVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMTGALAQSNTTAIFINQLREKIGVFFGSPETTTGGKALK
FYASVRLDIRRIQTLKNGDEAVGNRTKVKVVKNKMAPPFKFAEFDILYGEGISREGSVLDMALQCDVVKKSGSWFTYEGD
QLGQGRENVRQFLKDNPALTDEIERKVKIKYGLIPDDSKPGGDGEASADDAAVSAETGENAPSSDSGAKA
MAQQSKTAKGGKAKSAEPQGNGGHGIDPRKQAALDTALKQVEKDFGKGSAMRLGDKPVQNVEVIPTGSLALDMALGIGGL
PRGRIVEIYGPESSGKTTLALHAVANAQKNGGVAAYIDAEHALDPVYAKKLGVDTDSLIISQPDNGEQALEIADMLVRSG
ALDVVVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMTGALAQSNTTAIFINQLREKIGVFFGSPETTTGGKALK
FYASVRLDIRRIQTLKNGDEAVGNRTKVKVVKNKMAPPFKFAEFDILYGEGISREGSVLDMALQCDVVKKSGSWFTYEGD
QLGQGRENVRQFLKDNPALTDEIERKVKIKYGLIPDDSKPGGDGEASADDAAVSAETGENAPSSDSGAKA
Nucleotide
Download Length: 1173 bp
>NTDB_id=763534 OZX70_RS06015 WP_277179888.1 1549381..1550553(-) (recA) [Bifidobacterium sp. ESL0732]
ATGGCACAGCAATCAAAGACCGCGAAAGGCGGCAAAGCCAAGAGCGCCGAGCCTCAGGGCAATGGTGGGCACGGCATCGA
TCCGCGCAAGCAGGCGGCACTCGACACCGCGTTGAAGCAAGTCGAAAAGGACTTTGGCAAGGGTTCGGCGATGCGTCTTG
GCGACAAGCCGGTGCAAAACGTCGAAGTCATTCCCACCGGTTCGTTGGCTCTCGATATGGCACTCGGGATCGGAGGCCTG
CCGCGCGGCAGGATTGTCGAGATTTATGGTCCTGAATCTTCCGGCAAGACCACGCTGGCATTGCATGCGGTGGCCAATGC
TCAGAAAAACGGGGGAGTGGCCGCCTATATCGACGCGGAACACGCGCTCGATCCGGTCTATGCCAAGAAGCTTGGCGTCG
ATACGGATTCCCTGATTATCTCTCAACCAGACAACGGCGAGCAAGCGCTCGAGATTGCGGATATGCTGGTGCGCAGCGGC
GCACTGGATGTCGTGGTCATTGATTCGGTCGCGGCTTTGGTTCCCAAGGCCGAAATCGAAGGCGAGATGGGCGATAGTCA
CGTCGGCCTGCAGGCGAGGCTCATGAGCCAGGCTCTGCGCAAGATGACCGGCGCTTTGGCCCAGTCCAACACCACCGCCA
TCTTCATCAACCAGCTGCGCGAGAAGATCGGTGTCTTCTTCGGCAGTCCGGAGACCACGACTGGTGGCAAGGCACTGAAG
TTCTATGCTTCGGTGCGTCTCGACATCCGCCGCATCCAGACTCTGAAGAACGGTGATGAGGCCGTTGGCAACCGTACAAA
GGTCAAGGTCGTCAAGAACAAGATGGCGCCGCCCTTCAAGTTCGCCGAGTTCGACATCCTCTACGGTGAGGGCATCTCCA
GGGAGGGCTCGGTGCTCGACATGGCATTGCAGTGCGATGTCGTGAAGAAATCCGGTTCCTGGTTCACCTATGAAGGCGAC
CAACTGGGGCAGGGGCGCGAGAACGTCCGCCAGTTCCTCAAGGACAACCCGGCGCTGACCGACGAAATCGAACGCAAGGT
CAAGATCAAGTACGGTCTGATTCCTGACGATTCCAAACCAGGAGGCGACGGTGAAGCATCCGCAGATGATGCCGCCGTTT
CAGCTGAGACCGGTGAAAACGCCCCATCCTCGGATTCGGGCGCAAAAGCCTAA
ATGGCACAGCAATCAAAGACCGCGAAAGGCGGCAAAGCCAAGAGCGCCGAGCCTCAGGGCAATGGTGGGCACGGCATCGA
TCCGCGCAAGCAGGCGGCACTCGACACCGCGTTGAAGCAAGTCGAAAAGGACTTTGGCAAGGGTTCGGCGATGCGTCTTG
GCGACAAGCCGGTGCAAAACGTCGAAGTCATTCCCACCGGTTCGTTGGCTCTCGATATGGCACTCGGGATCGGAGGCCTG
CCGCGCGGCAGGATTGTCGAGATTTATGGTCCTGAATCTTCCGGCAAGACCACGCTGGCATTGCATGCGGTGGCCAATGC
TCAGAAAAACGGGGGAGTGGCCGCCTATATCGACGCGGAACACGCGCTCGATCCGGTCTATGCCAAGAAGCTTGGCGTCG
ATACGGATTCCCTGATTATCTCTCAACCAGACAACGGCGAGCAAGCGCTCGAGATTGCGGATATGCTGGTGCGCAGCGGC
GCACTGGATGTCGTGGTCATTGATTCGGTCGCGGCTTTGGTTCCCAAGGCCGAAATCGAAGGCGAGATGGGCGATAGTCA
CGTCGGCCTGCAGGCGAGGCTCATGAGCCAGGCTCTGCGCAAGATGACCGGCGCTTTGGCCCAGTCCAACACCACCGCCA
TCTTCATCAACCAGCTGCGCGAGAAGATCGGTGTCTTCTTCGGCAGTCCGGAGACCACGACTGGTGGCAAGGCACTGAAG
TTCTATGCTTCGGTGCGTCTCGACATCCGCCGCATCCAGACTCTGAAGAACGGTGATGAGGCCGTTGGCAACCGTACAAA
GGTCAAGGTCGTCAAGAACAAGATGGCGCCGCCCTTCAAGTTCGCCGAGTTCGACATCCTCTACGGTGAGGGCATCTCCA
GGGAGGGCTCGGTGCTCGACATGGCATTGCAGTGCGATGTCGTGAAGAAATCCGGTTCCTGGTTCACCTATGAAGGCGAC
CAACTGGGGCAGGGGCGCGAGAACGTCCGCCAGTTCCTCAAGGACAACCCGGCGCTGACCGACGAAATCGAACGCAAGGT
CAAGATCAAGTACGGTCTGATTCCTGACGATTCCAAACCAGGAGGCGACGGTGAAGCATCCGCAGATGATGCCGCCGTTT
CAGCTGAGACCGGTGAAAACGCCCCATCCTCGGATTCGGGCGCAAAAGCCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.