Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | OZX71_RS02990 | Genome accession | NZ_CP113919 |
| Coordinates | 834608..835801 (+) | Length | 397 a.a. |
| NCBI ID | WP_277160449.1 | Uniprot ID | - |
| Organism | Bifidobacterium sp. ESL0764 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 751805..838913 | 834608..835801 | within | 0 |
Gene organization within MGE regions
Location: 751805..838913
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OZX71_RS02670 (OZX71_02670) | - | 752282..753841 (+) | 1560 | WP_277160638.1 | galactose-1-phosphate uridylyltransferase | - |
| OZX71_RS02675 (OZX71_02675) | nagB | 753947..754735 (+) | 789 | WP_277145508.1 | glucosamine-6-phosphate deaminase | - |
| OZX71_RS02680 (OZX71_02680) | nagA | 754967..756286 (+) | 1320 | WP_277160409.1 | N-acetylglucosamine-6-phosphate deacetylase | - |
| OZX71_RS02685 (OZX71_02685) | - | 756476..757372 (-) | 897 | WP_277145506.1 | carbohydrate kinase | - |
| OZX71_RS02690 (OZX71_02690) | - | 757484..758818 (-) | 1335 | WP_277160410.1 | ROK family transcriptional regulator | - |
| OZX71_RS02695 (OZX71_02695) | - | 759036..759557 (-) | 522 | WP_277160411.1 | NUDIX domain-containing protein | - |
| OZX71_RS02700 (OZX71_02700) | - | 759971..761569 (-) | 1599 | WP_277147320.1 | aminopeptidase P family protein | - |
| OZX71_RS02705 (OZX71_02705) | - | 761680..763491 (-) | 1812 | WP_277147318.1 | hypothetical protein | - |
| OZX71_RS02710 (OZX71_02710) | - | 763925..765523 (+) | 1599 | WP_277160412.1 | folylpolyglutamate synthase/dihydrofolate synthase family protein | - |
| OZX71_RS02715 (OZX71_02715) | - | 765727..765855 (+) | 129 | WP_277147315.1 | hypothetical protein | - |
| OZX71_RS02720 (OZX71_02720) | - | 765908..769708 (+) | 3801 | WP_277160413.1 | AAA family ATPase | - |
| OZX71_RS02725 (OZX71_02725) | asnB | 769880..771841 (+) | 1962 | WP_277160414.1 | asparagine synthase (glutamine-hydrolyzing) | - |
| OZX71_RS02730 (OZX71_02730) | - | 771978..772718 (-) | 741 | WP_277160415.1 | amino acid racemase | - |
| OZX71_RS02735 (OZX71_02735) | - | 772815..774059 (-) | 1245 | WP_277160416.1 | carboxylate--amine ligase | - |
| OZX71_RS02740 (OZX71_02740) | - | 774142..775785 (-) | 1644 | WP_277160417.1 | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase | - |
| OZX71_RS02745 (OZX71_02745) | - | 776070..776834 (-) | 765 | WP_277160418.1 | exonuclease domain-containing protein | - |
| OZX71_RS02750 (OZX71_02750) | - | 777142..777750 (+) | 609 | WP_277160639.1 | sigma-70 family RNA polymerase sigma factor | - |
| OZX71_RS02755 (OZX71_02755) | - | 777839..778132 (+) | 294 | WP_277160419.1 | hypothetical protein | - |
| OZX71_RS02760 (OZX71_02760) | - | 778593..779546 (-) | 954 | WP_277160420.1 | aldose 1-epimerase family protein | - |
| OZX71_RS02765 (OZX71_02765) | ybaK | 779940..780449 (-) | 510 | WP_277147297.1 | Cys-tRNA(Pro) deacylase | - |
| OZX71_RS02770 (OZX71_02770) | gap | 780593..781648 (-) | 1056 | WP_277147295.1 | type I glyceraldehyde-3-phosphate dehydrogenase | - |
| OZX71_RS02775 (OZX71_02775) | - | 781720..782091 (-) | 372 | WP_348519496.1 | arsenate reductase family protein | - |
| OZX71_RS02780 (OZX71_02780) | - | 782253..783122 (-) | 870 | WP_277160421.1 | thiamine diphosphokinase | - |
| OZX71_RS02785 (OZX71_02785) | - | 783319..783687 (+) | 369 | WP_277160422.1 | VOC family protein | - |
| OZX71_RS02790 (OZX71_02790) | - | 783786..784307 (+) | 522 | WP_277160423.1 | GNAT family N-acetyltransferase | - |
| OZX71_RS02795 (OZX71_02795) | infC | 784562..785239 (+) | 678 | Protein_538 | translation initiation factor IF-3 | - |
| OZX71_RS02800 (OZX71_02800) | rpmI | 785552..785746 (+) | 195 | WP_277147283.1 | 50S ribosomal protein L35 | - |
| OZX71_RS02805 (OZX71_02805) | rplT | 785801..786184 (+) | 384 | WP_277147281.1 | 50S ribosomal protein L20 | - |
| OZX71_RS02810 (OZX71_02810) | - | 786301..787410 (+) | 1110 | WP_277160424.1 | class C sortase | - |
| OZX71_RS02815 (OZX71_02815) | - | 787615..790251 (+) | 2637 | WP_277160425.1 | hypothetical protein | - |
| OZX71_RS02820 (OZX71_02820) | - | 790390..792414 (+) | 2025 | WP_277160426.1 | isopeptide-forming domain-containing fimbrial protein | - |
| OZX71_RS02825 (OZX71_02825) | xerD | 792534..793454 (+) | 921 | WP_277160427.1 | site-specific tyrosine recombinase XerD | - |
| OZX71_RS02830 (OZX71_02830) | - | 794146..794985 (+) | 840 | WP_277147401.1 | AAA family ATPase | - |
| OZX71_RS02835 (OZX71_02835) | - | 795057..795962 (+) | 906 | WP_277160428.1 | segregation/condensation protein A | - |
| OZX71_RS02840 (OZX71_02840) | scpB | 796211..796837 (+) | 627 | WP_277160640.1 | SMC-Scp complex subunit ScpB | - |
| OZX71_RS02845 (OZX71_02845) | - | 797020..797856 (+) | 837 | WP_277160429.1 | NUDIX hydrolase | - |
| OZX71_RS02850 (OZX71_02850) | typA | 798060..799988 (+) | 1929 | WP_277147267.1 | translational GTPase TypA | - |
| OZX71_RS02855 (OZX71_02855) | - | 800183..800707 (+) | 525 | WP_277160430.1 | alcohol dehydrogenase | - |
| OZX71_RS02860 (OZX71_02860) | - | 800704..801753 (+) | 1050 | WP_277160431.1 | prephenate dehydratase domain-containing protein | - |
| OZX71_RS02865 (OZX71_02865) | - | 801747..802763 (+) | 1017 | WP_277160432.1 | prephenate dehydrogenase/arogenate dehydrogenase family protein | - |
| OZX71_RS02870 (OZX71_02870) | - | 802766..803032 (-) | 267 | WP_277147259.1 | DUF6725 family protein | - |
| OZX71_RS02875 (OZX71_02875) | - | 803250..804350 (+) | 1101 | WP_277160433.1 | tyrosine recombinase XerC | - |
| OZX71_RS02880 (OZX71_02880) | - | 804567..806210 (+) | 1644 | WP_277160434.1 | ABC transporter substrate-binding protein | - |
| OZX71_RS02885 (OZX71_02885) | - | 806570..808201 (+) | 1632 | WP_277147253.1 | ABC transporter substrate-binding protein | - |
| OZX71_RS02890 (OZX71_02890) | - | 808401..809327 (+) | 927 | WP_277147251.1 | ABC transporter permease | - |
| OZX71_RS02895 (OZX71_02895) | - | 809345..810322 (+) | 978 | WP_277147250.1 | ABC transporter permease | - |
| OZX71_RS02900 (OZX71_02900) | - | 810339..812363 (+) | 2025 | WP_277160435.1 | ABC transporter ATP-binding protein | - |
| OZX71_RS02905 (OZX71_02905) | - | 812571..813437 (+) | 867 | WP_277160436.1 | exodeoxyribonuclease III | - |
| OZX71_RS02910 (OZX71_02910) | - | 813536..814447 (+) | 912 | WP_277160437.1 | DUF3710 domain-containing protein | - |
| OZX71_RS02915 (OZX71_02915) | - | 814602..815411 (+) | 810 | WP_277160438.1 | DUF3159 domain-containing protein | - |
| OZX71_RS02920 (OZX71_02920) | - | 815649..816947 (+) | 1299 | WP_277160439.1 | TRAM domain-containing protein | - |
| OZX71_RS02925 (OZX71_02925) | - | 817003..817536 (+) | 534 | WP_277160440.1 | hypothetical protein | - |
| OZX71_RS02930 (OZX71_02930) | - | 817714..820407 (+) | 2694 | WP_277160441.1 | HAD-IC family P-type ATPase | - |
| OZX71_RS02935 (OZX71_02935) | acnA | 820869..823589 (+) | 2721 | WP_277160442.1 | aconitate hydratase AcnA | - |
| OZX71_RS02940 (OZX71_02940) | - | 823710..824645 (-) | 936 | WP_277160444.1 | Bax inhibitor-1/YccA family protein | - |
| OZX71_RS02945 (OZX71_02945) | - | 824913..825749 (+) | 837 | WP_277160445.1 | aldo/keto reductase | - |
| OZX71_RS02950 (OZX71_02950) | - | 825866..826630 (-) | 765 | WP_277147227.1 | GTP pyrophosphokinase family protein | - |
| OZX71_RS02955 (OZX71_02955) | miaA | 826766..827773 (+) | 1008 | WP_277160446.1 | tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA | - |
| OZX71_RS02960 (OZX71_02960) | - | 827941..828873 (-) | 933 | WP_277160447.1 | Fic family protein | - |
| OZX71_RS02965 (OZX71_02965) | - | 829072..831969 (+) | 2898 | WP_277160448.1 | DNA translocase FtsK | - |
| OZX71_RS02970 (OZX71_02970) | pgsA | 832009..832698 (+) | 690 | WP_277147221.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| OZX71_RS02975 (OZX71_02975) | - | 832909..833439 (+) | 531 | WP_277147395.1 | CinA family protein | - |
| OZX71_RS02980 (OZX71_02980) | - | 833505..834017 (+) | 513 | WP_277147219.1 | helix-turn-helix transcriptional regulator | - |
| OZX71_RS02985 (OZX71_02985) | - | 834144..834377 (+) | 234 | WP_277147217.1 | DUF3046 domain-containing protein | - |
| OZX71_RS02990 (OZX71_02990) | recA | 834608..835801 (+) | 1194 | WP_277160449.1 | recombinase RecA | Machinery gene |
| OZX71_RS02995 (OZX71_02995) | - | 836243..836737 (+) | 495 | WP_348519532.1 | regulatory protein RecX | - |
| OZX71_RS03000 (OZX71_03000) | - | 836937..838295 (+) | 1359 | WP_277160450.1 | MFS transporter | - |
Sequence
Protein
Download Length: 397 a.a. Molecular weight: 41775.16 Da Isoelectric Point: 5.3590
>NTDB_id=763529 OZX71_RS02990 WP_277160449.1 834608..835801(+) (recA) [Bifidobacterium sp. ESL0764]
MAQQSKTAKGGKAKSAGPQANGEHGIDPRKQAALDTALKQVEKDFGKGSAMRLGDKPVQDVEVIPTGSLALDMALGIGGL
PRGRIVEIYGPESSGKTTLALHAVANAQKAGGVAAYIDAEHALDPVYAKKLGVDTDQLIISQPDNGEQALEIADMLVRSG
ALDIVVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMTGALAQSNTTAIFINQLREKIGVFFGSPETTTGGKALK
FYASVRLDIRRIQTLKNGDEAVGNRTKVKVVKNKMAPPFKFAEFDILYGEGISREGSVLDMAIQCDVVKKSGSWFTYEGD
QLGQGRENVRQFLKDNPALTDEIERKVKIKYGLIEDDSKPEDGGDTSQDSGSSDAGDAAAASASAGSAPSSGSEAKA
MAQQSKTAKGGKAKSAGPQANGEHGIDPRKQAALDTALKQVEKDFGKGSAMRLGDKPVQDVEVIPTGSLALDMALGIGGL
PRGRIVEIYGPESSGKTTLALHAVANAQKAGGVAAYIDAEHALDPVYAKKLGVDTDQLIISQPDNGEQALEIADMLVRSG
ALDIVVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMTGALAQSNTTAIFINQLREKIGVFFGSPETTTGGKALK
FYASVRLDIRRIQTLKNGDEAVGNRTKVKVVKNKMAPPFKFAEFDILYGEGISREGSVLDMAIQCDVVKKSGSWFTYEGD
QLGQGRENVRQFLKDNPALTDEIERKVKIKYGLIEDDSKPEDGGDTSQDSGSSDAGDAAAASASAGSAPSSGSEAKA
Nucleotide
Download Length: 1194 bp
>NTDB_id=763529 OZX71_RS02990 WP_277160449.1 834608..835801(+) (recA) [Bifidobacterium sp. ESL0764]
ATGGCACAGCAATCAAAAACCGCCAAGGGCGGCAAAGCCAAGAGCGCCGGGCCCCAAGCCAATGGCGAACATGGCATCGA
CCCGCGCAAGCAGGCGGCGCTCGATACCGCGCTCAAACAGGTCGAAAAGGACTTCGGCAAGGGCTCGGCGATGCGGCTCG
GCGACAAACCGGTGCAGGACGTCGAGGTCATTCCCACCGGTTCGCTGGCACTTGATATGGCTCTCGGAATCGGAGGTCTG
CCCCGCGGCAGGATCGTCGAGATCTACGGTCCGGAATCTTCCGGCAAGACCACGTTGGCGCTGCACGCAGTGGCCAATGC
GCAGAAGGCCGGTGGCGTGGCTGCCTATATCGATGCGGAACATGCGCTCGATCCGGTCTACGCCAAGAAGCTCGGTGTCG
ATACGGACCAATTGATCATTTCCCAGCCAGACAACGGCGAGCAGGCGCTTGAGATCGCGGATATGCTGGTGCGCAGTGGC
GCACTGGATATCGTGGTCATCGATTCGGTGGCGGCTTTGGTGCCCAAGGCCGAGATCGAAGGCGAGATGGGAGACAGCCA
CGTCGGTCTGCAGGCCAGGCTGATGAGCCAGGCGCTGCGCAAGATGACCGGTGCGTTGGCCCAGTCCAACACCACCGCCA
TCTTCATCAACCAGTTGCGCGAGAAGATCGGTGTCTTCTTCGGCAGTCCGGAGACCACGACCGGTGGCAAGGCGCTGAAG
TTCTATGCTTCCGTGCGTCTCGACATCCGCCGTATCCAGACGTTGAAGAACGGTGATGAGGCGGTCGGCAACCGCACCAA
GGTCAAGGTCGTCAAGAACAAGATGGCGCCGCCCTTCAAGTTCGCCGAATTCGACATCCTCTACGGGGAGGGCATCTCCC
GGGAGGGCTCTGTGCTCGATATGGCGATCCAGTGCGATGTCGTCAAGAAGTCCGGATCGTGGTTCACCTACGAAGGTGAC
CAACTGGGGCAGGGGCGTGAGAATGTCCGTCAGTTCCTCAAGGACAATCCGGCATTGACCGACGAGATCGAACGCAAGGT
GAAGATCAAATACGGCCTGATTGAAGACGATTCGAAACCTGAAGACGGTGGCGACACTTCGCAGGATTCCGGTTCCTCGG
ATGCCGGCGATGCCGCAGCTGCAAGCGCATCTGCTGGGAGTGCCCCGTCTTCGGGTTCAGAGGCGAAAGCCTAG
ATGGCACAGCAATCAAAAACCGCCAAGGGCGGCAAAGCCAAGAGCGCCGGGCCCCAAGCCAATGGCGAACATGGCATCGA
CCCGCGCAAGCAGGCGGCGCTCGATACCGCGCTCAAACAGGTCGAAAAGGACTTCGGCAAGGGCTCGGCGATGCGGCTCG
GCGACAAACCGGTGCAGGACGTCGAGGTCATTCCCACCGGTTCGCTGGCACTTGATATGGCTCTCGGAATCGGAGGTCTG
CCCCGCGGCAGGATCGTCGAGATCTACGGTCCGGAATCTTCCGGCAAGACCACGTTGGCGCTGCACGCAGTGGCCAATGC
GCAGAAGGCCGGTGGCGTGGCTGCCTATATCGATGCGGAACATGCGCTCGATCCGGTCTACGCCAAGAAGCTCGGTGTCG
ATACGGACCAATTGATCATTTCCCAGCCAGACAACGGCGAGCAGGCGCTTGAGATCGCGGATATGCTGGTGCGCAGTGGC
GCACTGGATATCGTGGTCATCGATTCGGTGGCGGCTTTGGTGCCCAAGGCCGAGATCGAAGGCGAGATGGGAGACAGCCA
CGTCGGTCTGCAGGCCAGGCTGATGAGCCAGGCGCTGCGCAAGATGACCGGTGCGTTGGCCCAGTCCAACACCACCGCCA
TCTTCATCAACCAGTTGCGCGAGAAGATCGGTGTCTTCTTCGGCAGTCCGGAGACCACGACCGGTGGCAAGGCGCTGAAG
TTCTATGCTTCCGTGCGTCTCGACATCCGCCGTATCCAGACGTTGAAGAACGGTGATGAGGCGGTCGGCAACCGCACCAA
GGTCAAGGTCGTCAAGAACAAGATGGCGCCGCCCTTCAAGTTCGCCGAATTCGACATCCTCTACGGGGAGGGCATCTCCC
GGGAGGGCTCTGTGCTCGATATGGCGATCCAGTGCGATGTCGTCAAGAAGTCCGGATCGTGGTTCACCTACGAAGGTGAC
CAACTGGGGCAGGGGCGTGAGAATGTCCGTCAGTTCCTCAAGGACAATCCGGCATTGACCGACGAGATCGAACGCAAGGT
GAAGATCAAATACGGCCTGATTGAAGACGATTCGAAACCTGAAGACGGTGGCGACACTTCGCAGGATTCCGGTTCCTCGG
ATGCCGGCGATGCCGCAGCTGCAAGCGCATCTGCTGGGAGTGCCCCGTCTTCGGGTTCAGAGGCGAAAGCCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.