Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | OZX72_RS06205 | Genome accession | NZ_CP113918 |
| Coordinates | 1544400..1545572 (-) | Length | 390 a.a. |
| NCBI ID | WP_277157813.1 | Uniprot ID | - |
| Organism | Bifidobacterium sp. ESL0769 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1536373..1594605 | 1544400..1545572 | within | 0 |
Gene organization within MGE regions
Location: 1536373..1594605
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OZX72_RS06175 (OZX72_06175) | - | 1537416..1538126 (-) | 711 | WP_277157806.1 | lysophospholipid acyltransferase family protein | - |
| OZX72_RS06180 (OZX72_06180) | - | 1538212..1538835 (+) | 624 | WP_277157807.1 | DUF308 domain-containing protein | - |
| OZX72_RS06185 (OZX72_06185) | secA | 1538956..1541868 (-) | 2913 | WP_277157809.1 | preprotein translocase subunit SecA | - |
| OZX72_RS06190 (OZX72_06190) | raiA | 1542140..1542832 (-) | 693 | WP_277157810.1 | ribosome-associated translation inhibitor RaiA | - |
| OZX72_RS09500 | - | 1543447..1543974 (-) | 528 | WP_348519675.1 | regulatory protein RecX | - |
| OZX72_RS06205 (OZX72_06205) | recA | 1544400..1545572 (-) | 1173 | WP_277157813.1 | recombinase RecA | Machinery gene |
| OZX72_RS06210 (OZX72_06210) | - | 1545813..1546046 (-) | 234 | WP_277157814.1 | DUF3046 domain-containing protein | - |
| OZX72_RS06215 (OZX72_06215) | - | 1546323..1546835 (-) | 513 | WP_277157815.1 | helix-turn-helix transcriptional regulator | - |
| OZX72_RS06220 (OZX72_06220) | - | 1546902..1547459 (-) | 558 | WP_277159387.1 | CinA family protein | - |
| OZX72_RS06225 (OZX72_06225) | pgsA | 1547656..1548345 (-) | 690 | WP_277157816.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| OZX72_RS06230 (OZX72_06230) | - | 1548383..1551274 (-) | 2892 | WP_277157817.1 | DNA translocase FtsK | - |
| OZX72_RS06235 (OZX72_06235) | - | 1551493..1552299 (+) | 807 | WP_277157818.1 | Fic family protein | - |
| OZX72_RS06240 (OZX72_06240) | miaA | 1552470..1553477 (-) | 1008 | WP_277157819.1 | tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA | - |
| OZX72_RS06245 (OZX72_06245) | - | 1553612..1554376 (+) | 765 | WP_277157820.1 | GTP pyrophosphokinase family protein | - |
| OZX72_RS06250 (OZX72_06250) | - | 1554570..1555577 (+) | 1008 | WP_277157821.1 | Bax inhibitor-1/YccA family protein | - |
| OZX72_RS06255 (OZX72_06255) | acnA | 1555725..1558445 (-) | 2721 | WP_277157822.1 | aconitate hydratase AcnA | - |
| OZX72_RS06260 (OZX72_06260) | - | 1558769..1561453 (-) | 2685 | WP_277157823.1 | HAD-IC family P-type ATPase | - |
| OZX72_RS06265 (OZX72_06265) | - | 1561627..1562202 (-) | 576 | WP_277157824.1 | hypothetical protein | - |
| OZX72_RS06270 (OZX72_06270) | - | 1562217..1563515 (-) | 1299 | WP_277157825.1 | TRAM domain-containing protein | - |
| OZX72_RS06275 (OZX72_06275) | - | 1563655..1564452 (-) | 798 | WP_277157826.1 | DUF3159 domain-containing protein | - |
| OZX72_RS06280 (OZX72_06280) | - | 1564669..1565604 (-) | 936 | WP_277157827.1 | DUF3710 domain-containing protein | - |
| OZX72_RS06285 (OZX72_06285) | - | 1565830..1566696 (-) | 867 | WP_277157828.1 | exodeoxyribonuclease III | - |
| OZX72_RS06290 (OZX72_06290) | - | 1566872..1568896 (-) | 2025 | WP_277157829.1 | ABC transporter ATP-binding protein | - |
| OZX72_RS06295 (OZX72_06295) | - | 1568914..1569891 (-) | 978 | WP_277157831.1 | ABC transporter permease | - |
| OZX72_RS06300 (OZX72_06300) | - | 1569909..1570835 (-) | 927 | WP_277157832.1 | ABC transporter permease | - |
| OZX72_RS06305 (OZX72_06305) | - | 1571036..1572673 (-) | 1638 | WP_277157834.1 | ABC transporter substrate-binding protein | - |
| OZX72_RS06310 (OZX72_06310) | - | 1572998..1574653 (-) | 1656 | WP_277157836.1 | ABC transporter substrate-binding protein | - |
| OZX72_RS06315 (OZX72_06315) | - | 1574851..1575864 (-) | 1014 | WP_277157837.1 | tyrosine recombinase XerC | - |
| OZX72_RS06320 (OZX72_06320) | - | 1576090..1576374 (+) | 285 | WP_277157838.1 | DUF6725 family protein | - |
| OZX72_RS06325 (OZX72_06325) | - | 1576444..1577502 (-) | 1059 | WP_277157839.1 | prephenate dehydrogenase/arogenate dehydrogenase family protein | - |
| OZX72_RS06330 (OZX72_06330) | - | 1577496..1578548 (-) | 1053 | WP_277157840.1 | prephenate dehydratase domain-containing protein | - |
| OZX72_RS06335 (OZX72_06335) | - | 1578545..1579150 (-) | 606 | WP_277157841.1 | hypothetical protein | - |
| OZX72_RS06340 (OZX72_06340) | typA | 1579208..1581139 (-) | 1932 | WP_277157842.1 | translational GTPase TypA | - |
| OZX72_RS06345 (OZX72_06345) | - | 1581358..1582176 (-) | 819 | WP_277157843.1 | NUDIX hydrolase | - |
| OZX72_RS06350 (OZX72_06350) | - | 1582341..1583732 (-) | 1392 | WP_277157844.1 | MFS transporter | - |
| OZX72_RS06355 (OZX72_06355) | scpB | 1583895..1584638 (-) | 744 | WP_277159388.1 | SMC-Scp complex subunit ScpB | - |
| OZX72_RS06360 (OZX72_06360) | - | 1584788..1585681 (-) | 894 | WP_277157845.1 | segregation/condensation protein A | - |
| OZX72_RS06365 (OZX72_06365) | - | 1585757..1586596 (-) | 840 | WP_277159389.1 | AAA family ATPase | - |
| OZX72_RS06370 (OZX72_06370) | xerD | 1587180..1588100 (-) | 921 | WP_277157846.1 | site-specific tyrosine recombinase XerD | - |
| OZX72_RS06375 (OZX72_06375) | - | 1588231..1590135 (-) | 1905 | WP_277157847.1 | isopeptide-forming domain-containing fimbrial protein | - |
| OZX72_RS06380 (OZX72_06380) | - | 1590134..1590334 (+) | 201 | WP_277157848.1 | hypothetical protein | - |
| OZX72_RS06385 (OZX72_06385) | - | 1590308..1592887 (-) | 2580 | WP_277157849.1 | LPXTG cell wall anchor domain-containing protein | - |
| OZX72_RS06390 (OZX72_06390) | - | 1593255..1594316 (-) | 1062 | WP_277157850.1 | class C sortase | - |
Sequence
Protein
Download Length: 390 a.a. Molecular weight: 41392.92 Da Isoelectric Point: 5.8488
>NTDB_id=763524 OZX72_RS06205 WP_277157813.1 1544400..1545572(-) (recA) [Bifidobacterium sp. ESL0769]
MAQQSKTAKGSKAKNAEPQANGEHGIDPRKQAALDTALKQVEKDFGKGSAMRLGDKPVQNVEVIPTGSLALDMALGIGGL
PRGRIVEIYGPESSGKTTLALHAVANAQKAGGVAAYIDAEHALDPVYAKKLGVDTDQLIISQPDNGEQALEIADMLVRSG
ALDVVVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMTGALAQSNTTAIFINQLREKIGVFFGSPETTTGGKALK
FYASVRLDIRRIQTLKNGDEAVGNRTKVKVVKNKMAPPFKFAEFDILYGEGISREGSVLDMALQCDVVKKSGSWFTYEGD
QLGQGRENVRQFLKDNPALTDEIERKVKIKYGLIPDDSKPEGDGEVSADDTANATEAGKGAPSSDSGAKA
MAQQSKTAKGSKAKNAEPQANGEHGIDPRKQAALDTALKQVEKDFGKGSAMRLGDKPVQNVEVIPTGSLALDMALGIGGL
PRGRIVEIYGPESSGKTTLALHAVANAQKAGGVAAYIDAEHALDPVYAKKLGVDTDQLIISQPDNGEQALEIADMLVRSG
ALDVVVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMTGALAQSNTTAIFINQLREKIGVFFGSPETTTGGKALK
FYASVRLDIRRIQTLKNGDEAVGNRTKVKVVKNKMAPPFKFAEFDILYGEGISREGSVLDMALQCDVVKKSGSWFTYEGD
QLGQGRENVRQFLKDNPALTDEIERKVKIKYGLIPDDSKPEGDGEVSADDTANATEAGKGAPSSDSGAKA
Nucleotide
Download Length: 1173 bp
>NTDB_id=763524 OZX72_RS06205 WP_277157813.1 1544400..1545572(-) (recA) [Bifidobacterium sp. ESL0769]
ATGGCACAGCAATCAAAGACTGCGAAGGGCAGCAAAGCCAAGAACGCCGAGCCTCAGGCCAACGGTGAGCACGGCATCGA
TCCGCGTAAGCAGGCGGCGCTCGACACCGCGTTGAAACAGGTCGAAAAGGACTTTGGCAAGGGCTCGGCGATGCGGCTTG
GCGACAAACCGGTGCAGAACGTCGAGGTCATTCCCACGGGTTCGCTGGCGCTCGATATGGCGCTGGGTATCGGAGGATTG
CCACGTGGCAGAATCGTCGAGATCTACGGCCCGGAATCTTCCGGTAAGACCACGCTGGCATTGCACGCGGTGGCCAATGC
TCAGAAAGCCGGCGGTGTCGCTGCATACATCGATGCGGAACACGCACTCGACCCGGTCTACGCCAAGAAGCTCGGCGTCG
ATACGGATCAATTGATTATTTCCCAGCCGGACAACGGCGAGCAGGCGCTTGAAATCGCGGACATGCTGGTGCGTAGCGGC
GCGCTTGATGTCGTGGTGATTGATTCGGTGGCGGCTTTGGTCCCCAAGGCCGAAATCGAAGGTGAGATGGGCGACAGCCA
CGTCGGTCTGCAGGCTCGTTTGATGAGCCAGGCGCTGCGTAAGATGACCGGTGCATTGGCCCAGTCCAATACCACCGCCA
TCTTCATCAACCAGCTGCGTGAGAAGATTGGTGTCTTCTTCGGCAGCCCGGAGACTACGACCGGCGGCAAGGCGCTGAAG
TTCTATGCTTCTGTGCGTCTCGACATTCGCCGTATCCAGACCTTGAAGAACGGTGACGAGGCCGTTGGCAACCGCACCAA
GGTCAAGGTCGTCAAGAACAAGATGGCGCCGCCGTTCAAGTTCGCCGAGTTCGACATTCTCTACGGAGAGGGCATCTCCA
GGGAAGGCTCGGTGCTCGACATGGCGCTACAGTGCGATGTCGTCAAGAAGTCTGGTTCCTGGTTCACCTATGAGGGCGAC
CAGCTGGGGCAAGGGCGTGAGAACGTCCGTCAGTTCCTCAAAGACAATCCGGCTTTGACTGATGAGATTGAGCGCAAGGT
GAAGATCAAATACGGTCTGATCCCTGACGATTCCAAGCCTGAAGGTGACGGCGAGGTGTCCGCGGATGATACCGCCAATG
CAACTGAAGCCGGCAAAGGCGCCCCGTCCTCGGATTCGGGCGCAAAAGCCTAG
ATGGCACAGCAATCAAAGACTGCGAAGGGCAGCAAAGCCAAGAACGCCGAGCCTCAGGCCAACGGTGAGCACGGCATCGA
TCCGCGTAAGCAGGCGGCGCTCGACACCGCGTTGAAACAGGTCGAAAAGGACTTTGGCAAGGGCTCGGCGATGCGGCTTG
GCGACAAACCGGTGCAGAACGTCGAGGTCATTCCCACGGGTTCGCTGGCGCTCGATATGGCGCTGGGTATCGGAGGATTG
CCACGTGGCAGAATCGTCGAGATCTACGGCCCGGAATCTTCCGGTAAGACCACGCTGGCATTGCACGCGGTGGCCAATGC
TCAGAAAGCCGGCGGTGTCGCTGCATACATCGATGCGGAACACGCACTCGACCCGGTCTACGCCAAGAAGCTCGGCGTCG
ATACGGATCAATTGATTATTTCCCAGCCGGACAACGGCGAGCAGGCGCTTGAAATCGCGGACATGCTGGTGCGTAGCGGC
GCGCTTGATGTCGTGGTGATTGATTCGGTGGCGGCTTTGGTCCCCAAGGCCGAAATCGAAGGTGAGATGGGCGACAGCCA
CGTCGGTCTGCAGGCTCGTTTGATGAGCCAGGCGCTGCGTAAGATGACCGGTGCATTGGCCCAGTCCAATACCACCGCCA
TCTTCATCAACCAGCTGCGTGAGAAGATTGGTGTCTTCTTCGGCAGCCCGGAGACTACGACCGGCGGCAAGGCGCTGAAG
TTCTATGCTTCTGTGCGTCTCGACATTCGCCGTATCCAGACCTTGAAGAACGGTGACGAGGCCGTTGGCAACCGCACCAA
GGTCAAGGTCGTCAAGAACAAGATGGCGCCGCCGTTCAAGTTCGCCGAGTTCGACATTCTCTACGGAGAGGGCATCTCCA
GGGAAGGCTCGGTGCTCGACATGGCGCTACAGTGCGATGTCGTCAAGAAGTCTGGTTCCTGGTTCACCTATGAGGGCGAC
CAGCTGGGGCAAGGGCGTGAGAACGTCCGTCAGTTCCTCAAAGACAATCCGGCTTTGACTGATGAGATTGAGCGCAAGGT
GAAGATCAAATACGGTCTGATCCCTGACGATTCCAAGCCTGAAGGTGACGGCGAGGTGTCCGCGGATGATACCGCCAATG
CAACTGAAGCCGGCAAAGGCGCCCCGTCCTCGGATTCGGGCGCAAAAGCCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.