Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | OZX73_RS03050 | Genome accession | NZ_CP113917 |
| Coordinates | 882383..883573 (+) | Length | 396 a.a. |
| NCBI ID | WP_277150554.1 | Uniprot ID | - |
| Organism | Bifidobacterium sp. ESL0775 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 859163..897807 | 882383..883573 | within | 0 |
Gene organization within MGE regions
Location: 859163..897807
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OZX73_RS02960 (OZX73_02960) | - | 859163..860275 (+) | 1113 | WP_277150526.1 | tyrosine recombinase XerC | - |
| OZX73_RS02965 (OZX73_02965) | - | 860379..861245 (+) | 867 | WP_277150528.1 | exodeoxyribonuclease III | - |
| OZX73_RS02970 (OZX73_02970) | - | 861460..862437 (+) | 978 | WP_277150530.1 | DUF3710 domain-containing protein | - |
| OZX73_RS02975 (OZX73_02975) | - | 862577..863236 (+) | 660 | Protein_577 | DUF3159 domain-containing protein | - |
| OZX73_RS02980 (OZX73_02980) | - | 863647..864945 (+) | 1299 | WP_277150532.1 | TRAM domain-containing protein | - |
| OZX73_RS02985 (OZX73_02985) | - | 865118..865675 (+) | 558 | WP_277150533.1 | hypothetical protein | - |
| OZX73_RS02990 (OZX73_02990) | - | 865846..868515 (+) | 2670 | WP_277150534.1 | HAD-IC family P-type ATPase | - |
| OZX73_RS02995 (OZX73_02995) | acnA | 868678..871395 (+) | 2718 | WP_277150535.1 | aconitate hydratase AcnA | - |
| OZX73_RS03000 (OZX73_03000) | - | 871546..872355 (-) | 810 | WP_348519470.1 | Bax inhibitor-1/YccA family protein | - |
| OZX73_RS03005 (OZX73_03005) | - | 872739..873575 (+) | 837 | WP_277150537.1 | aldo/keto reductase | - |
| OZX73_RS03010 (OZX73_03010) | - | 873678..874454 (-) | 777 | WP_277150539.1 | GTP pyrophosphokinase family protein | - |
| OZX73_RS03015 (OZX73_03015) | miaA | 874576..875610 (+) | 1035 | WP_277150541.1 | tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA | - |
| OZX73_RS03020 (OZX73_03020) | - | 875635..876432 (-) | 798 | WP_277150543.1 | Fic family protein | - |
| OZX73_RS03025 (OZX73_03025) | - | 876651..879533 (+) | 2883 | WP_277150545.1 | DNA translocase FtsK | - |
| OZX73_RS03030 (OZX73_03030) | pgsA | 879659..880348 (+) | 690 | WP_277150547.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| OZX73_RS03035 (OZX73_03035) | - | 880559..881089 (+) | 531 | WP_277150905.1 | nicotinamide-nucleotide amidohydrolase family protein | - |
| OZX73_RS03040 (OZX73_03040) | - | 881155..881667 (+) | 513 | WP_277150549.1 | helix-turn-helix transcriptional regulator | - |
| OZX73_RS03045 (OZX73_03045) | - | 881902..882135 (+) | 234 | WP_277150552.1 | DUF3046 domain-containing protein | - |
| OZX73_RS03050 (OZX73_03050) | recA | 882383..883573 (+) | 1191 | WP_277150554.1 | recombinase RecA | Machinery gene |
| OZX73_RS03055 (OZX73_03055) | - | 883996..884490 (+) | 495 | WP_348519471.1 | regulatory protein RecX | - |
| OZX73_RS03065 (OZX73_03065) | raiA | 885273..885965 (+) | 693 | WP_277150556.1 | ribosome-associated translation inhibitor RaiA | - |
| OZX73_RS03070 (OZX73_03070) | secA | 886215..889151 (+) | 2937 | WP_277150557.1 | preprotein translocase subunit SecA | - |
| OZX73_RS03075 (OZX73_03075) | - | 889389..890126 (-) | 738 | WP_348519463.1 | hypothetical protein | - |
| OZX73_RS03080 (OZX73_03080) | - | 890213..890917 (+) | 705 | WP_277150558.1 | lysophospholipid acyltransferase family protein | - |
| OZX73_RS03085 (OZX73_03085) | - | 891116..893521 (-) | 2406 | WP_277150559.1 | Stk1 family PASTA domain-containing Ser/Thr kinase | - |
| OZX73_RS03090 (OZX73_03090) | - | 893686..894813 (-) | 1128 | WP_277150560.1 | polyprenyl synthetase family protein | - |
| OZX73_RS03095 (OZX73_03095) | - | 895024..895947 (+) | 924 | WP_277150561.1 | hypothetical protein | - |
| OZX73_RS03100 (OZX73_03100) | - | 896164..897807 (+) | 1644 | WP_277150562.1 | RNA polymerase sigma factor | - |
Sequence
Protein
Download Length: 396 a.a. Molecular weight: 41722.19 Da Isoelectric Point: 5.3590
>NTDB_id=763521 OZX73_RS03050 WP_277150554.1 882383..883573(+) (recA) [Bifidobacterium sp. ESL0775]
MAQQSKTTKGAKAKNAQTESGGEHGIDPRKQAALDTALKQVEKDFGKGSAMRLGDKPVQNVEVIPTGSLALDMALGIGGL
PRGRIVEIYGPESSGKTTLALHAVANAQKAGGVAAYIDAEHALDPVYAKKLGVDTDQLIISQPDNGEQALEIADMLVRSG
ALDVVVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMTGALAQSNTTAIFINQLREKIGVFFGSPETTTGGKALK
FYASVRLDIRRIQTLKNGDEAIGNRTKVKVVKNKMAPPFKFAEFDILYGEGISKEGSVLDMALQCDVVKKSGSWFTYEGD
QLGQGRENVRQFLKDNPALTDEIERKVKVKYGLIPDDSKPADGDGEDADNGGDADATAGANGGGASGSIPESAPKA
MAQQSKTTKGAKAKNAQTESGGEHGIDPRKQAALDTALKQVEKDFGKGSAMRLGDKPVQNVEVIPTGSLALDMALGIGGL
PRGRIVEIYGPESSGKTTLALHAVANAQKAGGVAAYIDAEHALDPVYAKKLGVDTDQLIISQPDNGEQALEIADMLVRSG
ALDVVVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMTGALAQSNTTAIFINQLREKIGVFFGSPETTTGGKALK
FYASVRLDIRRIQTLKNGDEAIGNRTKVKVVKNKMAPPFKFAEFDILYGEGISKEGSVLDMALQCDVVKKSGSWFTYEGD
QLGQGRENVRQFLKDNPALTDEIERKVKVKYGLIPDDSKPADGDGEDADNGGDADATAGANGGGASGSIPESAPKA
Nucleotide
Download Length: 1191 bp
>NTDB_id=763521 OZX73_RS03050 WP_277150554.1 882383..883573(+) (recA) [Bifidobacterium sp. ESL0775]
ATGGCACAGCAATCAAAAACGACGAAAGGCGCCAAGGCCAAGAACGCCCAGACCGAGTCTGGTGGCGAGCATGGCATCGA
TCCACGCAAGCAGGCGGCGCTCGACACCGCGCTGAAGCAGGTCGAGAAGGACTTCGGCAAGGGCTCGGCCATGCGGCTTG
GCGACAAGCCGGTGCAGAACGTCGAGGTCATCCCCACGGGTTCCTTGGCGCTCGATATGGCGTTGGGCATCGGGGGCCTG
CCGCGCGGCAGGATCGTGGAGATCTATGGCCCCGAGTCCTCCGGCAAGACCACGCTGGCTCTGCATGCTGTGGCCAACGC
GCAGAAGGCCGGCGGTGTGGCGGCGTACATCGACGCCGAGCACGCGCTCGATCCGGTCTATGCCAAAAAGCTTGGCGTTG
ATACGGACCAGCTGATCATCTCCCAGCCGGACAACGGCGAGCAGGCGCTTGAGATCGCCGACATGCTGGTGCGCAGTGGC
GCGCTGGACGTCGTGGTCATCGATTCGGTGGCGGCCCTGGTGCCCAAGGCCGAGATCGAAGGCGAGATGGGCGACAGCCA
TGTGGGCCTGCAGGCCCGGTTGATGAGCCAGGCGCTGCGCAAGATGACCGGCGCGTTGGCGCAGTCCAACACCACCGCCA
TCTTCATCAACCAGTTGCGTGAGAAGATCGGCGTCTTCTTCGGCAGTCCGGAGACGACGACCGGTGGCAAGGCGTTGAAG
TTCTATGCCTCCGTGCGCCTTGACATCCGCCGCATCCAGACGTTGAAGAACGGCGACGAGGCCATCGGCAATCGCACCAA
GGTCAAGGTCGTCAAGAACAAGATGGCTCCGCCCTTCAAGTTCGCCGAGTTCGACATCCTCTACGGGGAGGGCATCTCCA
AGGAGGGCTCCGTGCTCGACATGGCGTTGCAGTGCGATGTCGTCAAGAAGTCCGGCTCCTGGTTCACCTATGAGGGCGAC
CAGCTGGGGCAGGGGCGTGAGAACGTGCGTCAGTTCCTGAAGGACAATCCGGCGCTGACCGACGAGATCGAACGCAAGGT
CAAGGTGAAGTACGGCCTGATTCCTGATGATTCCAAGCCCGCTGATGGTGATGGCGAGGATGCGGATAACGGTGGCGACG
CTGACGCTACGGCTGGTGCCAATGGTGGTGGCGCCTCCGGTTCCATTCCTGAATCGGCGCCAAAAGCCTGA
ATGGCACAGCAATCAAAAACGACGAAAGGCGCCAAGGCCAAGAACGCCCAGACCGAGTCTGGTGGCGAGCATGGCATCGA
TCCACGCAAGCAGGCGGCGCTCGACACCGCGCTGAAGCAGGTCGAGAAGGACTTCGGCAAGGGCTCGGCCATGCGGCTTG
GCGACAAGCCGGTGCAGAACGTCGAGGTCATCCCCACGGGTTCCTTGGCGCTCGATATGGCGTTGGGCATCGGGGGCCTG
CCGCGCGGCAGGATCGTGGAGATCTATGGCCCCGAGTCCTCCGGCAAGACCACGCTGGCTCTGCATGCTGTGGCCAACGC
GCAGAAGGCCGGCGGTGTGGCGGCGTACATCGACGCCGAGCACGCGCTCGATCCGGTCTATGCCAAAAAGCTTGGCGTTG
ATACGGACCAGCTGATCATCTCCCAGCCGGACAACGGCGAGCAGGCGCTTGAGATCGCCGACATGCTGGTGCGCAGTGGC
GCGCTGGACGTCGTGGTCATCGATTCGGTGGCGGCCCTGGTGCCCAAGGCCGAGATCGAAGGCGAGATGGGCGACAGCCA
TGTGGGCCTGCAGGCCCGGTTGATGAGCCAGGCGCTGCGCAAGATGACCGGCGCGTTGGCGCAGTCCAACACCACCGCCA
TCTTCATCAACCAGTTGCGTGAGAAGATCGGCGTCTTCTTCGGCAGTCCGGAGACGACGACCGGTGGCAAGGCGTTGAAG
TTCTATGCCTCCGTGCGCCTTGACATCCGCCGCATCCAGACGTTGAAGAACGGCGACGAGGCCATCGGCAATCGCACCAA
GGTCAAGGTCGTCAAGAACAAGATGGCTCCGCCCTTCAAGTTCGCCGAGTTCGACATCCTCTACGGGGAGGGCATCTCCA
AGGAGGGCTCCGTGCTCGACATGGCGTTGCAGTGCGATGTCGTCAAGAAGTCCGGCTCCTGGTTCACCTATGAGGGCGAC
CAGCTGGGGCAGGGGCGTGAGAACGTGCGTCAGTTCCTGAAGGACAATCCGGCGCTGACCGACGAGATCGAACGCAAGGT
CAAGGTGAAGTACGGCCTGATTCCTGATGATTCCAAGCCCGCTGATGGTGATGGCGAGGATGCGGATAACGGTGGCGACG
CTGACGCTACGGCTGGTGCCAATGGTGGTGGCGCCTCCGGTTCCATTCCTGAATCGGCGCCAAAAGCCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.