Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | OZY47_RS02940 | Genome accession | NZ_CP113915 |
| Coordinates | 813873..815057 (+) | Length | 394 a.a. |
| NCBI ID | WP_277178583.1 | Uniprot ID | - |
| Organism | Bifidobacterium sp. ESL0790 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 731063..814734 | 813873..815057 | flank | -861 |
Gene organization within MGE regions
Location: 731063..815057
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OZY47_RS02625 (OZY47_02625) | - | 731431..733029 (-) | 1599 | WP_277178472.1 | aminopeptidase P family protein | - |
| OZY47_RS02630 (OZY47_02630) | - | 733236..734861 (+) | 1626 | WP_277178474.1 | folylpolyglutamate synthase/dihydrofolate synthase family protein | - |
| OZY47_RS02635 (OZY47_02635) | - | 735260..739045 (+) | 3786 | WP_277178476.1 | AAA family ATPase | - |
| OZY47_RS02640 (OZY47_02640) | - | 739193..739933 (-) | 741 | WP_277178478.1 | amino acid racemase | - |
| OZY47_RS02645 (OZY47_02645) | - | 739930..741174 (-) | 1245 | WP_277178481.1 | carboxylate--amine ligase | - |
| OZY47_RS02650 (OZY47_02650) | - | 741199..742836 (-) | 1638 | WP_277178483.1 | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase | - |
| OZY47_RS02655 (OZY47_02655) | - | 742901..743641 (-) | 741 | WP_277178485.1 | exonuclease domain-containing protein | - |
| OZY47_RS02660 (OZY47_02660) | - | 743941..744591 (+) | 651 | WP_277179092.1 | sigma-70 family RNA polymerase sigma factor | - |
| OZY47_RS02665 (OZY47_02665) | - | 744702..744980 (+) | 279 | WP_277178487.1 | hypothetical protein | - |
| OZY47_RS02670 (OZY47_02670) | - | 745588..746541 (-) | 954 | WP_277178489.1 | aldose 1-epimerase family protein | - |
| OZY47_RS02675 (OZY47_02675) | ybaK | 746718..747227 (-) | 510 | WP_277178491.1 | Cys-tRNA(Pro) deacylase | - |
| OZY47_RS02680 (OZY47_02680) | gap | 747510..748565 (-) | 1056 | WP_277178493.1 | type I glyceraldehyde-3-phosphate dehydrogenase | - |
| OZY47_RS02685 (OZY47_02685) | - | 748633..749076 (-) | 444 | WP_277178495.1 | arsenate reductase family protein | - |
| OZY47_RS02690 (OZY47_02690) | - | 749475..750368 (-) | 894 | WP_277178497.1 | thiamine diphosphokinase | - |
| OZY47_RS02695 (OZY47_02695) | infC | 750688..751368 (+) | 681 | Protein_519 | translation initiation factor IF-3 | - |
| OZY47_RS02700 (OZY47_02700) | rpmI | 751682..751876 (+) | 195 | WP_277178499.1 | 50S ribosomal protein L35 | - |
| OZY47_RS02705 (OZY47_02705) | rplT | 751927..752310 (+) | 384 | WP_277178501.1 | 50S ribosomal protein L20 | - |
| OZY47_RS02710 (OZY47_02710) | - | 752817..755393 (+) | 2577 | WP_277178503.1 | hypothetical protein | - |
| OZY47_RS02715 (OZY47_02715) | - | 755607..757520 (+) | 1914 | WP_277178505.1 | isopeptide-forming domain-containing fimbrial protein | - |
| OZY47_RS02720 (OZY47_02720) | - | 757826..758893 (+) | 1068 | WP_277178507.1 | class C sortase | - |
| OZY47_RS02725 (OZY47_02725) | xerD | 758980..759900 (+) | 921 | WP_277178509.1 | site-specific tyrosine recombinase XerD | - |
| OZY47_RS02730 (OZY47_02730) | - | 760175..761014 (+) | 840 | WP_277179094.1 | AAA family ATPase | - |
| OZY47_RS02735 (OZY47_02735) | - | 761079..762095 (+) | 1017 | WP_277178511.1 | segregation/condensation protein A | - |
| OZY47_RS02740 (OZY47_02740) | scpB | 762197..762826 (+) | 630 | WP_277179096.1 | SMC-Scp complex subunit ScpB | - |
| OZY47_RS02745 (OZY47_02745) | nadA | 763184..764470 (+) | 1287 | WP_277178513.1 | quinolinate synthase NadA | - |
| OZY47_RS02750 (OZY47_02750) | nadB | 764515..766155 (+) | 1641 | WP_277179098.1 | L-aspartate oxidase | - |
| OZY47_RS02755 (OZY47_02755) | nadC | 766281..767189 (+) | 909 | WP_277179100.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| OZY47_RS02760 (OZY47_02760) | - | 767208..768515 (+) | 1308 | WP_277178515.1 | cysteine desulfurase family protein | - |
| OZY47_RS02765 (OZY47_02765) | - | 768648..769532 (+) | 885 | WP_277178517.1 | NUDIX domain-containing protein | - |
| OZY47_RS02770 (OZY47_02770) | typA | 769825..771756 (+) | 1932 | WP_277178519.1 | translational GTPase TypA | - |
| OZY47_RS02775 (OZY47_02775) | - | 771923..772732 (+) | 810 | WP_277178521.1 | hypothetical protein | - |
| OZY47_RS02780 (OZY47_02780) | - | 772729..773811 (+) | 1083 | WP_277178523.1 | prephenate dehydratase domain-containing protein | - |
| OZY47_RS02785 (OZY47_02785) | - | 773805..774800 (+) | 996 | WP_277178525.1 | prephenate dehydrogenase/arogenate dehydrogenase family protein | - |
| OZY47_RS02790 (OZY47_02790) | - | 774910..775206 (-) | 297 | WP_277178527.1 | DUF6725 family protein | - |
| OZY47_RS02795 (OZY47_02795) | - | 775411..776409 (+) | 999 | WP_277178529.1 | tyrosine recombinase XerC | - |
| OZY47_RS02800 (OZY47_02800) | - | 776682..778319 (+) | 1638 | WP_277178531.1 | ABC transporter substrate-binding protein | - |
| OZY47_RS02805 (OZY47_02805) | - | 778701..780323 (+) | 1623 | WP_277178533.1 | ABC transporter substrate-binding protein | - |
| OZY47_RS02810 (OZY47_02810) | - | 780529..781455 (+) | 927 | WP_277178535.1 | ABC transporter permease | - |
| OZY47_RS02815 (OZY47_02815) | - | 781476..782453 (+) | 978 | WP_277178538.1 | ABC transporter permease | - |
| OZY47_RS02820 (OZY47_02820) | - | 782474..784489 (+) | 2016 | WP_277178540.1 | ABC transporter ATP-binding protein | - |
| OZY47_RS02825 (OZY47_02825) | - | 784591..785451 (+) | 861 | WP_277178542.1 | exodeoxyribonuclease III | - |
| OZY47_RS02830 (OZY47_02830) | - | 785668..786579 (+) | 912 | WP_277178544.1 | DUF3710 domain-containing protein | - |
| OZY47_RS02835 (OZY47_02835) | - | 786640..787461 (+) | 822 | WP_277178546.1 | DUF3159 domain-containing protein | - |
| OZY47_RS02840 (OZY47_02840) | - | 787620..788918 (+) | 1299 | WP_277178548.1 | TRAM domain-containing protein | - |
| OZY47_RS02845 (OZY47_02845) | - | 788939..789733 (+) | 795 | WP_277178551.1 | hypothetical protein | - |
| OZY47_RS02850 (OZY47_02850) | - | 789714..792404 (+) | 2691 | WP_277178553.1 | HAD-IC family P-type ATPase | - |
| OZY47_RS02855 (OZY47_02855) | - | 792703..792927 (-) | 225 | WP_277178555.1 | hypothetical protein | - |
| OZY47_RS02860 (OZY47_02860) | acnA | 793135..795855 (+) | 2721 | WP_277178558.1 | aconitate hydratase AcnA | - |
| OZY47_RS02865 (OZY47_02865) | - | 795938..796639 (-) | 702 | WP_277179102.1 | response regulator transcription factor | - |
| OZY47_RS02870 (OZY47_02870) | - | 797133..798593 (-) | 1461 | WP_277178560.1 | sensor histidine kinase | - |
| OZY47_RS02875 (OZY47_02875) | - | 798813..799715 (+) | 903 | WP_277178562.1 | Ltp family lipoprotein | - |
| OZY47_RS02880 (OZY47_02880) | - | 800006..800878 (+) | 873 | WP_277178564.1 | DUF559 domain-containing protein | - |
| OZY47_RS02885 (OZY47_02885) | - | 800937..801953 (-) | 1017 | WP_277178566.1 | Bax inhibitor-1/YccA family protein | - |
| OZY47_RS02890 (OZY47_02890) | - | 802360..803133 (-) | 774 | WP_277179104.1 | GTP pyrophosphokinase family protein | - |
| OZY47_RS02895 (OZY47_02895) | miaA | 803330..804370 (+) | 1041 | WP_277178568.1 | tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA | - |
| OZY47_RS02900 (OZY47_02900) | - | 804636..805427 (-) | 792 | WP_277178570.1 | Fic family protein | - |
| OZY47_RS02905 (OZY47_02905) | - | 805556..808333 (+) | 2778 | WP_277178572.1 | DNA translocase FtsK | - |
| OZY47_RS02910 (OZY47_02910) | - | 808451..810283 (+) | 1833 | WP_277178574.1 | restriction endonuclease | - |
| OZY47_RS02915 (OZY47_02915) | - | 810421..810678 (+) | 258 | Protein_563 | DNA translocase FtsK | - |
| OZY47_RS02920 (OZY47_02920) | pgsA | 810885..811547 (+) | 663 | WP_277178576.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| OZY47_RS02925 (OZY47_02925) | - | 812050..812553 (+) | 504 | WP_277179106.1 | nicotinamide-nucleotide amidohydrolase family protein | - |
| OZY47_RS02930 (OZY47_02930) | - | 812626..813138 (+) | 513 | WP_277178579.1 | helix-turn-helix transcriptional regulator | - |
| OZY47_RS02935 (OZY47_02935) | - | 813319..813552 (+) | 234 | WP_277178581.1 | DUF3046 domain-containing protein | - |
| OZY47_RS02940 (OZY47_02940) | recA | 813873..815057 (+) | 1185 | WP_277178583.1 | recombinase RecA | Machinery gene |
Sequence
Protein
Download Length: 394 a.a. Molecular weight: 41700.18 Da Isoelectric Point: 5.3808
>NTDB_id=763497 OZY47_RS02940 WP_277178583.1 813873..815057(+) (recA) [Bifidobacterium sp. ESL0790]
MAQKNTSKDGKVKNLKAEESKGQGIDPRRQAALDTALKQVEKSFGKGSAMRLGDKPVQNVEVIPTGSLALDMALGIGGLP
RGRIVEIYGPESSGKTTLALHAVANAQKAGGVAAYIDAEHALDPVYAKKLGVDTDSLIISQPDNGEQALEIADMLVRSGA
LDVVVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMTGALSQSGTTAIFINQLREKIGVFFGSPETTTGGKALKF
YASVRLDIRRIQTIKNGDEAVGNRTKVKVVKNKMAPPFKFAEFDILYGEGISKEGSVLDMALQCDVVKKSGSWFTYEGDQ
LGQGRENVRQFLKDNPALTEEIERKVKVKYGLIPDDSAADGDGNETSDTDVSASAGDAADTTGKADAEAGSNKG
MAQKNTSKDGKVKNLKAEESKGQGIDPRRQAALDTALKQVEKSFGKGSAMRLGDKPVQNVEVIPTGSLALDMALGIGGLP
RGRIVEIYGPESSGKTTLALHAVANAQKAGGVAAYIDAEHALDPVYAKKLGVDTDSLIISQPDNGEQALEIADMLVRSGA
LDVVVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMTGALSQSGTTAIFINQLREKIGVFFGSPETTTGGKALKF
YASVRLDIRRIQTIKNGDEAVGNRTKVKVVKNKMAPPFKFAEFDILYGEGISKEGSVLDMALQCDVVKKSGSWFTYEGDQ
LGQGRENVRQFLKDNPALTEEIERKVKVKYGLIPDDSAADGDGNETSDTDVSASAGDAADTTGKADAEAGSNKG
Nucleotide
Download Length: 1185 bp
>NTDB_id=763497 OZY47_RS02940 WP_277178583.1 813873..815057(+) (recA) [Bifidobacterium sp. ESL0790]
ATGGCGCAGAAGAACACATCGAAAGATGGCAAGGTGAAGAACCTCAAGGCCGAGGAGAGCAAGGGCCAGGGCATCGACCC
GCGCAGGCAGGCGGCGCTCGACACCGCGTTGAAGCAGGTCGAGAAGAGCTTCGGCAAGGGCTCGGCCATGCGGCTTGGCG
ACAAGCCCGTGCAGAACGTCGAGGTCATCCCCACCGGCTCGCTCGCCCTTGACATGGCGCTGGGTATCGGGGGGCTGCCG
CGCGGCAGGATCGTGGAGATCTATGGCCCGGAGTCCTCGGGCAAGACCACGTTGGCGCTGCATGCCGTCGCCAACGCGCA
GAAGGCCGGCGGCGTGGCGGCCTATATCGACGCCGAGCACGCGCTCGATCCGGTCTATGCCAAGAAGCTCGGGGTCGACA
CCGATTCCCTGATTATCTCCCAGCCCGACAACGGCGAGCAAGCGCTTGAGATCGCCGACATGCTGGTGCGTTCCGGCGCG
CTCGACGTCGTGGTCATCGATTCGGTAGCCGCCTTGGTGCCCAAGGCCGAGATCGAGGGCGAGATGGGCGACAGCCACGT
CGGCCTGCAGGCCAGGCTCATGAGCCAGGCGCTGCGCAAGATGACCGGCGCGCTTTCGCAGTCCGGCACCACGGCCATTT
TCATCAACCAACTGCGTGAGAAGATCGGCGTCTTCTTCGGCAGCCCGGAGACCACCACCGGCGGCAAGGCGCTGAAGTTC
TACGCCTCGGTGCGTCTCGACATCAGGCGTATCCAGACCATCAAGAACGGTGACGAGGCGGTGGGCAACCGCACCAAGGT
GAAGGTCGTCAAGAACAAGATGGCCCCGCCCTTCAAGTTCGCCGAGTTCGACATCCTCTACGGCGAGGGCATCTCCAAGG
AGGGCTCCGTGCTCGACATGGCGTTGCAGTGCGACGTCGTCAAGAAGTCGGGCTCGTGGTTCACCTACGAGGGCGACCAG
CTGGGGCAGGGGCGCGAAAACGTGCGCCAGTTCCTCAAAGACAACCCGGCCCTCACCGAGGAGATCGAGCGCAAGGTCAA
GGTCAAATACGGCCTTATTCCCGACGATTCCGCCGCCGACGGCGATGGGAACGAGACTTCCGACACGGATGTCTCGGCCT
CCGCGGGCGATGCCGCCGACACCACTGGCAAGGCCGATGCCGAAGCCGGTTCGAACAAAGGCTGA
ATGGCGCAGAAGAACACATCGAAAGATGGCAAGGTGAAGAACCTCAAGGCCGAGGAGAGCAAGGGCCAGGGCATCGACCC
GCGCAGGCAGGCGGCGCTCGACACCGCGTTGAAGCAGGTCGAGAAGAGCTTCGGCAAGGGCTCGGCCATGCGGCTTGGCG
ACAAGCCCGTGCAGAACGTCGAGGTCATCCCCACCGGCTCGCTCGCCCTTGACATGGCGCTGGGTATCGGGGGGCTGCCG
CGCGGCAGGATCGTGGAGATCTATGGCCCGGAGTCCTCGGGCAAGACCACGTTGGCGCTGCATGCCGTCGCCAACGCGCA
GAAGGCCGGCGGCGTGGCGGCCTATATCGACGCCGAGCACGCGCTCGATCCGGTCTATGCCAAGAAGCTCGGGGTCGACA
CCGATTCCCTGATTATCTCCCAGCCCGACAACGGCGAGCAAGCGCTTGAGATCGCCGACATGCTGGTGCGTTCCGGCGCG
CTCGACGTCGTGGTCATCGATTCGGTAGCCGCCTTGGTGCCCAAGGCCGAGATCGAGGGCGAGATGGGCGACAGCCACGT
CGGCCTGCAGGCCAGGCTCATGAGCCAGGCGCTGCGCAAGATGACCGGCGCGCTTTCGCAGTCCGGCACCACGGCCATTT
TCATCAACCAACTGCGTGAGAAGATCGGCGTCTTCTTCGGCAGCCCGGAGACCACCACCGGCGGCAAGGCGCTGAAGTTC
TACGCCTCGGTGCGTCTCGACATCAGGCGTATCCAGACCATCAAGAACGGTGACGAGGCGGTGGGCAACCGCACCAAGGT
GAAGGTCGTCAAGAACAAGATGGCCCCGCCCTTCAAGTTCGCCGAGTTCGACATCCTCTACGGCGAGGGCATCTCCAAGG
AGGGCTCCGTGCTCGACATGGCGTTGCAGTGCGACGTCGTCAAGAAGTCGGGCTCGTGGTTCACCTACGAGGGCGACCAG
CTGGGGCAGGGGCGCGAAAACGTGCGCCAGTTCCTCAAAGACAACCCGGCCCTCACCGAGGAGATCGAGCGCAAGGTCAA
GGTCAAATACGGCCTTATTCCCGACGATTCCGCCGCCGACGGCGATGGGAACGAGACTTCCGACACGGATGTCTCGGCCT
CCGCGGGCGATGCCGCCGACACCACTGGCAAGGCCGATGCCGAAGCCGGTTCGAACAAAGGCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.