Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | OZX74_RS06065 | Genome accession | NZ_CP113914 |
| Coordinates | 1444908..1446116 (-) | Length | 402 a.a. |
| NCBI ID | WP_277156074.1 | Uniprot ID | - |
| Organism | Bifidobacterium sp. ESL0798 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1436178..1488700 | 1444908..1446116 | within | 0 |
Gene organization within MGE regions
Location: 1436178..1488700
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OZX74_RS06035 (OZX74_06030) | - | 1437825..1438526 (-) | 702 | WP_277156069.1 | lysophospholipid acyltransferase family protein | - |
| OZX74_RS06040 (OZX74_06035) | - | 1438845..1439219 (+) | 375 | WP_277156070.1 | DUF308 domain-containing protein | - |
| OZX74_RS06045 (OZX74_06040) | secA | 1439445..1442369 (-) | 2925 | WP_277156071.1 | preprotein translocase subunit SecA | - |
| OZX74_RS06050 (OZX74_06045) | raiA | 1442634..1443326 (-) | 693 | WP_277156072.1 | ribosome-associated translation inhibitor RaiA | - |
| OZX74_RS06060 (OZX74_06055) | - | 1443975..1444613 (-) | 639 | WP_277156073.1 | regulatory protein RecX | - |
| OZX74_RS06065 (OZX74_06060) | recA | 1444908..1446116 (-) | 1209 | WP_277156074.1 | recombinase RecA | Machinery gene |
| OZX74_RS06070 (OZX74_06065) | - | 1446346..1446579 (-) | 234 | WP_277156075.1 | DUF3046 domain-containing protein | - |
| OZX74_RS06075 (OZX74_06070) | - | 1446824..1447336 (-) | 513 | WP_277156076.1 | helix-turn-helix transcriptional regulator | - |
| OZX74_RS06080 (OZX74_06075) | - | 1447402..1447959 (-) | 558 | WP_277157434.1 | CinA family protein | - |
| OZX74_RS06085 (OZX74_06080) | pgsA | 1448133..1448831 (-) | 699 | WP_277156077.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| OZX74_RS06090 (OZX74_06085) | - | 1448870..1451771 (-) | 2902 | Protein_1180 | DNA translocase FtsK | - |
| OZX74_RS06095 (OZX74_06090) | - | 1451980..1452792 (+) | 813 | WP_277156078.1 | Fic family protein | - |
| OZX74_RS06100 (OZX74_06095) | miaA | 1452801..1453805 (-) | 1005 | WP_277156079.1 | tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA | - |
| OZX74_RS06105 (OZX74_06100) | - | 1453941..1454705 (+) | 765 | WP_277156080.1 | GTP pyrophosphokinase family protein | - |
| OZX74_RS06110 (OZX74_06105) | - | 1455021..1455815 (+) | 795 | WP_277157435.1 | Bax inhibitor-1/YccA family protein | - |
| OZX74_RS06115 (OZX74_06110) | acnA | 1455950..1458667 (-) | 2718 | WP_277156081.1 | aconitate hydratase AcnA | - |
| OZX74_RS06120 (OZX74_06115) | - | 1458970..1461672 (-) | 2703 | WP_277156082.1 | HAD-IC family P-type ATPase | - |
| OZX74_RS06125 (OZX74_06120) | - | 1461852..1462427 (-) | 576 | WP_277156083.1 | hypothetical protein | - |
| OZX74_RS06130 (OZX74_06125) | - | 1462440..1463738 (-) | 1299 | WP_277156084.1 | TRAM domain-containing protein | - |
| OZX74_RS06135 (OZX74_06130) | - | 1464073..1464732 (-) | 660 | Protein_1189 | DUF3159 domain-containing protein | - |
| OZX74_RS06140 (OZX74_06135) | - | 1464879..1465742 (-) | 864 | WP_277156085.1 | DUF3710 domain-containing protein | - |
| OZX74_RS06145 (OZX74_06140) | - | 1465966..1466832 (-) | 867 | WP_277156086.1 | exodeoxyribonuclease III | - |
| OZX74_RS06150 (OZX74_06145) | - | 1466825..1466953 (+) | 129 | WP_277156087.1 | hypothetical protein | - |
| OZX74_RS06155 (OZX74_06150) | - | 1466983..1469007 (-) | 2025 | WP_277156088.1 | ABC transporter ATP-binding protein | - |
| OZX74_RS06160 (OZX74_06155) | - | 1469024..1470001 (-) | 978 | WP_277156089.1 | ABC transporter permease | - |
| OZX74_RS06165 (OZX74_06160) | - | 1470024..1470950 (-) | 927 | WP_277156090.1 | ABC transporter permease | - |
| OZX74_RS06170 (OZX74_06165) | - | 1471189..1472829 (-) | 1641 | WP_277156091.1 | ABC transporter substrate-binding protein | - |
| OZX74_RS06175 (OZX74_06170) | - | 1472970..1474594 (-) | 1625 | Protein_1197 | alpha-amylase family glycosyl hydrolase | - |
| OZX74_RS06180 (OZX74_06175) | - | 1474912..1476558 (-) | 1647 | WP_277156092.1 | ABC transporter substrate-binding protein | - |
| OZX74_RS06185 (OZX74_06180) | - | 1476757..1477785 (-) | 1029 | WP_277156093.1 | tyrosine recombinase XerC | - |
| OZX74_RS06190 (OZX74_06185) | - | 1477954..1478391 (-) | 438 | WP_277156094.1 | hypothetical protein | - |
| OZX74_RS06195 (OZX74_06190) | - | 1478360..1478518 (-) | 159 | WP_277156095.1 | hypothetical protein | - |
| OZX74_RS06200 (OZX74_06195) | - | 1478693..1478968 (+) | 276 | WP_277156096.1 | DUF6725 family protein | - |
| OZX74_RS06205 (OZX74_06200) | - | 1479063..1480138 (-) | 1076 | Protein_1203 | prephenate dehydrogenase/arogenate dehydrogenase family protein | - |
| OZX74_RS06210 (OZX74_06205) | - | 1480132..1481181 (-) | 1050 | WP_277156098.1 | prephenate dehydratase domain-containing protein | - |
| OZX74_RS06215 (OZX74_06210) | - | 1481178..1481699 (-) | 522 | WP_277156099.1 | alcohol dehydrogenase | - |
| OZX74_RS06220 (OZX74_06215) | typA | 1481909..1483837 (-) | 1929 | WP_277156100.1 | translational GTPase TypA | - |
| OZX74_RS06225 (OZX74_06220) | - | 1484057..1484884 (-) | 828 | WP_277156101.1 | NUDIX hydrolase | - |
| OZX74_RS06230 (OZX74_06225) | scpB | 1485017..1485712 (-) | 696 | WP_277157436.1 | SMC-Scp complex subunit ScpB | - |
| OZX74_RS06235 (OZX74_06230) | - | 1485958..1486809 (-) | 852 | WP_277157437.1 | ScpA family protein | - |
| OZX74_RS06240 (OZX74_06235) | - | 1486929..1487768 (-) | 840 | WP_277157438.1 | AAA family ATPase | - |
Sequence
Protein
Download Length: 402 a.a. Molecular weight: 42449.92 Da Isoelectric Point: 5.5671
>NTDB_id=763492 OZX74_RS06065 WP_277156074.1 1444908..1446116(-) (recA) [Bifidobacterium sp. ESL0798]
MAQQSKTAKGGKAKNAAPQANGEHGIDPRKQAALDTALKQVEKDFGKGSAMRLGDKPVQNVEVIPTGSLALDMALGIGGL
PRGRIVEIYGPESSGKTTLALHAVANAQKAGGVAAYIDAEHALDPVYAKKLGVDTDQLIISQPDNGEQALEIADMLVRSG
ALDVVVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMTGALAQSNTTAIFINQLREKIGVFFGSPETTTGGKALK
FYASVRLDIRRIQTLKNGDEAVGNRTKVKVVKNKMAPPFKFAEFDILYGEGISREGSVLDMAIQCDVVKKSGSWFTYEGD
QLGQGRENVRQFLKDNPALTDEIERKVKIKYGLIPDDSKPDDDGDGKDADSQQDSGSSRADAGAGASEVGGASSTPDSAP
KA
MAQQSKTAKGGKAKNAAPQANGEHGIDPRKQAALDTALKQVEKDFGKGSAMRLGDKPVQNVEVIPTGSLALDMALGIGGL
PRGRIVEIYGPESSGKTTLALHAVANAQKAGGVAAYIDAEHALDPVYAKKLGVDTDQLIISQPDNGEQALEIADMLVRSG
ALDVVVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMTGALAQSNTTAIFINQLREKIGVFFGSPETTTGGKALK
FYASVRLDIRRIQTLKNGDEAVGNRTKVKVVKNKMAPPFKFAEFDILYGEGISREGSVLDMAIQCDVVKKSGSWFTYEGD
QLGQGRENVRQFLKDNPALTDEIERKVKIKYGLIPDDSKPDDDGDGKDADSQQDSGSSRADAGAGASEVGGASSTPDSAP
KA
Nucleotide
Download Length: 1209 bp
>NTDB_id=763492 OZX74_RS06065 WP_277156074.1 1444908..1446116(-) (recA) [Bifidobacterium sp. ESL0798]
ATGGCACAGCAATCAAAAACCGCTAAGGGCGGCAAAGCCAAGAACGCCGCGCCCCAGGCCAACGGCGAGCACGGCATCGA
CCCACGCAAGCAGGCGGCGCTCGATACCGCGCTGAAACAAGTCGAAAAAGATTTCGGCAAAGGTTCCGCGATGCGCCTTG
GCGACAAGCCCGTGCAGAACGTCGAAGTCATCCCTACAGGTTCCCTGGCTCTTGATATGGCGCTGGGGATCGGAGGTCTG
CCGCGTGGCAGGATTGTAGAGATTTACGGTCCGGAATCGTCCGGCAAGACCACGCTGGCGTTGCATGCAGTGGCCAATGC
GCAGAAAGCCGGTGGCGTGGCGGCCTATATCGATGCGGAACATGCGCTCGATCCGGTTTACGCCAAGAAGCTCGGTGTCG
ATACGGATCAATTGATCATTTCCCAGCCCGATAACGGCGAGCAGGCTCTTGAGATCGCGGATATGCTGGTGCGCAGCGGT
GCGCTGGATGTCGTGGTCATCGATTCGGTCGCGGCTTTGGTGCCCAAGGCCGAAATCGAAGGTGAGATGGGCGACAGCCA
TGTCGGTCTGCAGGCCCGTTTGATGAGCCAGGCGTTGCGTAAAATGACCGGTGCGTTGGCGCAGTCCAATACCACCGCCA
TTTTCATCAACCAGTTGCGTGAGAAAATCGGTGTCTTCTTCGGCAGCCCGGAAACGACTACCGGTGGCAAGGCGCTGAAA
TTCTATGCCTCGGTGCGTCTCGACATCCGTCGAATCCAGACGTTGAAGAACGGTGACGAGGCGGTTGGCAACCGCACCAA
GGTCAAGGTCGTCAAAAACAAGATGGCTCCGCCCTTCAAGTTCGCCGAGTTCGACATCCTCTACGGGGAGGGCATCTCCC
GTGAGGGTTCCGTGCTTGATATGGCAATCCAATGCGATGTCGTCAAGAAGTCTGGCTCCTGGTTCACTTATGAGGGCGAC
CAGCTGGGGCAGGGGCGCGAGAACGTTCGCCAGTTCCTCAAAGACAATCCGGCGCTGACCGACGAGATCGAGCGCAAGGT
GAAGATCAAATACGGTCTGATTCCTGACGATTCAAAACCGGATGATGACGGAGACGGGAAAGATGCCGACTCACAGCAGG
ATTCCGGTTCGTCTCGTGCCGATGCCGGCGCAGGCGCGTCTGAAGTTGGCGGAGCCTCCTCTACACCCGATTCGGCTCCG
AAAGCCTGA
ATGGCACAGCAATCAAAAACCGCTAAGGGCGGCAAAGCCAAGAACGCCGCGCCCCAGGCCAACGGCGAGCACGGCATCGA
CCCACGCAAGCAGGCGGCGCTCGATACCGCGCTGAAACAAGTCGAAAAAGATTTCGGCAAAGGTTCCGCGATGCGCCTTG
GCGACAAGCCCGTGCAGAACGTCGAAGTCATCCCTACAGGTTCCCTGGCTCTTGATATGGCGCTGGGGATCGGAGGTCTG
CCGCGTGGCAGGATTGTAGAGATTTACGGTCCGGAATCGTCCGGCAAGACCACGCTGGCGTTGCATGCAGTGGCCAATGC
GCAGAAAGCCGGTGGCGTGGCGGCCTATATCGATGCGGAACATGCGCTCGATCCGGTTTACGCCAAGAAGCTCGGTGTCG
ATACGGATCAATTGATCATTTCCCAGCCCGATAACGGCGAGCAGGCTCTTGAGATCGCGGATATGCTGGTGCGCAGCGGT
GCGCTGGATGTCGTGGTCATCGATTCGGTCGCGGCTTTGGTGCCCAAGGCCGAAATCGAAGGTGAGATGGGCGACAGCCA
TGTCGGTCTGCAGGCCCGTTTGATGAGCCAGGCGTTGCGTAAAATGACCGGTGCGTTGGCGCAGTCCAATACCACCGCCA
TTTTCATCAACCAGTTGCGTGAGAAAATCGGTGTCTTCTTCGGCAGCCCGGAAACGACTACCGGTGGCAAGGCGCTGAAA
TTCTATGCCTCGGTGCGTCTCGACATCCGTCGAATCCAGACGTTGAAGAACGGTGACGAGGCGGTTGGCAACCGCACCAA
GGTCAAGGTCGTCAAAAACAAGATGGCTCCGCCCTTCAAGTTCGCCGAGTTCGACATCCTCTACGGGGAGGGCATCTCCC
GTGAGGGTTCCGTGCTTGATATGGCAATCCAATGCGATGTCGTCAAGAAGTCTGGCTCCTGGTTCACTTATGAGGGCGAC
CAGCTGGGGCAGGGGCGCGAGAACGTTCGCCAGTTCCTCAAAGACAATCCGGCGCTGACCGACGAGATCGAGCGCAAGGT
GAAGATCAAATACGGTCTGATTCCTGACGATTCAAAACCGGATGATGACGGAGACGGGAAAGATGCCGACTCACAGCAGG
ATTCCGGTTCGTCTCGTGCCGATGCCGGCGCAGGCGCGTCTGAAGTTGGCGGAGCCTCCTCTACACCCGATTCGGCTCCG
AAAGCCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.