Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   OZX75_RS04255 Genome accession   NZ_CP113913
Coordinates   1046895..1048088 (-) Length   397 a.a.
NCBI ID   WP_277147215.1    Uniprot ID   -
Organism   Bifidobacterium sp. ESL0800     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1041895..1053088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZX75_RS04240 (OZX75_04240) - 1042711..1044276 (-) 1566 WP_277147210.1 glycoside hydrolase family 32 protein -
  OZX75_RS04245 (OZX75_04245) - 1044398..1045756 (-) 1359 WP_277147212.1 MFS transporter -
  OZX75_RS04250 (OZX75_04250) - 1045956..1046453 (-) 498 WP_348519495.1 regulatory protein RecX -
  OZX75_RS04255 (OZX75_04255) recA 1046895..1048088 (-) 1194 WP_277147215.1 recombinase RecA Machinery gene
  OZX75_RS04260 (OZX75_04260) - 1048319..1048552 (-) 234 WP_277147217.1 DUF3046 domain-containing protein -
  OZX75_RS04265 (OZX75_04265) - 1048679..1049191 (-) 513 WP_277147219.1 helix-turn-helix transcriptional regulator -
  OZX75_RS04270 (OZX75_04270) - 1049257..1049787 (-) 531 WP_277147395.1 CinA family protein -
  OZX75_RS04275 (OZX75_04275) pgsA 1049998..1050687 (-) 690 WP_277147221.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -

Sequence

Protein


Download         Length: 397 a.a.        Molecular weight: 41814.24 Da        Isoelectric Point: 5.5678

>NTDB_id=763487 OZX75_RS04255 WP_277147215.1 1046895..1048088(-) (recA) [Bifidobacterium sp. ESL0800]
MAQQSKTAKGGKAKNAGPQANGEHGIDPRKQAALDTALKQVEKDFGKGSAMRLGDKPVQDVEVIPTGSLALDMALGIGGL
PRGRIVEIYGPESSGKTTLALHAVANAQKAGGVAAYIDAEHALDPVYAKKLGVDTDQLIISQPDNGEQALEIADMLVRSG
ALDIVVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMTGALAQSNTTAIFINQLREKIGVFFGSPETTTGGKALK
FYASVRLDIRRIQTLKNGDEAVGNRTKVKVVKNKMAPPFKFAEFDILYGEGISREGSVLDMAIQCDVVKKSGSWFTYEGD
QLGQGRENVRQFLKDNPALTDEIERKVKIKYGLIEDDSKPDDGGDASRDSGSAAEGDAAAASASAGSTPSSGSEAKA

Nucleotide


Download         Length: 1194 bp        

>NTDB_id=763487 OZX75_RS04255 WP_277147215.1 1046895..1048088(-) (recA) [Bifidobacterium sp. ESL0800]
ATGGCACAGCAATCAAAAACCGCCAAGGGCGGCAAAGCCAAGAACGCCGGGCCCCAAGCCAATGGCGAACATGGCATCGA
CCCGCGCAAGCAGGCGGCGCTCGATACCGCGCTCAAACAGGTCGAAAAGGACTTCGGCAAGGGCTCGGCGATGCGGCTCG
GCGACAAGCCGGTGCAGGACGTCGAGGTCATTCCCACCGGTTCGCTGGCACTTGATATGGCTCTCGGAATCGGAGGTCTG
CCCCGCGGCAGGATCGTCGAGATCTACGGTCCGGAATCTTCCGGCAAGACCACGTTGGCGCTGCACGCAGTGGCCAATGC
GCAGAAGGCCGGTGGCGTGGCGGCCTATATCGATGCGGAACATGCGCTCGACCCGGTCTATGCCAAGAAGCTCGGTGTCG
ATACGGACCAATTGATCATTTCCCAGCCAGACAACGGCGAGCAGGCGCTTGAGATCGCGGATATGCTGGTGCGCAGTGGC
GCACTGGATATCGTGGTCATCGATTCGGTGGCGGCTTTGGTGCCCAAGGCCGAGATCGAAGGCGAGATGGGAGACAGCCA
CGTCGGTCTGCAGGCCAGGCTGATGAGCCAGGCGCTGCGCAAGATGACCGGTGCGTTGGCCCAGTCCAACACCACCGCCA
TCTTCATCAACCAGTTGCGCGAGAAGATCGGTGTCTTCTTCGGCAGTCCGGAGACCACGACCGGTGGCAAGGCGCTGAAG
TTCTATGCTTCCGTGCGTCTCGACATCCGCCGTATCCAGACGTTGAAGAACGGTGATGAGGCGGTCGGCAACCGCACCAA
GGTCAAGGTCGTCAAGAACAAGATGGCGCCGCCTTTCAAGTTCGCCGAATTCGACATCCTCTACGGCGAGGGCATCTCCC
GGGAGGGCTCGGTGCTCGATATGGCGATCCAGTGCGATGTCGTCAAGAAGTCCGGATCGTGGTTCACCTACGAAGGTGAC
CAACTGGGGCAGGGGCGTGAGAACGTCCGTCAGTTCCTCAAGGACAATCCGGCATTGACCGACGAGATCGAACGCAAGGT
GAAGATCAAGTACGGTCTGATTGAAGACGATTCCAAGCCTGATGACGGTGGCGACGCTTCTCGGGATTCTGGTTCCGCTG
CTGAAGGCGATGCCGCAGCTGCAAGCGCATCTGCTGGGAGTACCCCATCTTCGGGTTCAGAGGCGAAAGCCTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(33-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

65.407

86.65

0.567
  recA Bacillus subtilis subsp. subtilis str. 168

67.901

81.612

0.554
  recA Acinetobacter baylyi ADP1

67.492

81.36

0.549
  recA Ralstonia pseudosolanacearum GMI1000

68.371

78.841

0.539
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.443

82.368

0.539
  recA Pseudomonas stutzeri DSM 10701

63.174

84.131

0.531
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.134

82.872

0.531
  recA Helicobacter pylori 26695

65.123

81.612

0.531
  recA Helicobacter pylori strain NCTC11637

65.123

81.612

0.531
  recA Latilactobacillus sakei subsp. sakei 23K

64.815

81.612

0.529
  recA Streptococcus mutans UA159

62.202

84.635

0.526
  recA Glaesserella parasuis strain SC1401

64.198

81.612

0.524
  recA Neisseria gonorrhoeae strain FA1090

67.097

78.086

0.524
  recA Neisseria gonorrhoeae MS11

67.097

78.086

0.524
  recA Neisseria gonorrhoeae MS11

67.097

78.086

0.524
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.396

81.36

0.524
  recA Vibrio cholerae strain A1552

64.396

81.36

0.524
  recA Streptococcus pyogenes NZ131

63.03

83.123

0.524
  recA Lactococcus lactis subsp. cremoris KW2

62.5

82.62

0.516
  recA Streptococcus pneumoniae Rx1

62.121

83.123

0.516
  recA Streptococcus mitis NCTC 12261

62.121

83.123

0.516
  recA Streptococcus pneumoniae D39

62.121

83.123

0.516
  recA Streptococcus pneumoniae R6

62.121

83.123

0.516
  recA Streptococcus pneumoniae TIGR4

62.121

83.123

0.516
  recA Streptococcus mitis SK321

61.818

83.123

0.514
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.129

80.353

0.491