Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   OYT13_RS21455 Genome accession   NZ_CP113827
Coordinates   4647616..4648680 (-) Length   354 a.a.
NCBI ID   WP_268566911.1    Uniprot ID   A0A9E9D9V7
Organism   Pandoraea sp. XJJ-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4642616..4653680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OYT13_RS21430 (OYT13_21430) - 4642963..4643691 (-) 729 WP_150563621.1 TerC family protein -
  OYT13_RS21435 (OYT13_21435) sucD 4643847..4644728 (-) 882 WP_017232938.1 succinate--CoA ligase subunit alpha -
  OYT13_RS21440 (OYT13_21440) sucC 4644811..4645977 (-) 1167 WP_017232937.1 ADP-forming succinate--CoA ligase subunit beta -
  OYT13_RS21445 (OYT13_21445) - 4645974..4646660 (-) 687 WP_017232936.1 DUF2889 domain-containing protein -
  OYT13_RS21450 (OYT13_21450) recX 4646970..4647515 (-) 546 WP_315973480.1 recombination regulator RecX -
  OYT13_RS21455 (OYT13_21455) recA 4647616..4648680 (-) 1065 WP_268566911.1 recombinase RecA Machinery gene
  OYT13_RS21460 (OYT13_21460) - 4648883..4649572 (+) 690 WP_017232933.1 response regulator transcription factor -
  OYT13_RS21465 (OYT13_21465) - 4649623..4651266 (+) 1644 WP_268566912.1 sensor histidine kinase -
  OYT13_RS21470 (OYT13_21470) - 4651438..4653096 (+) 1659 WP_268566913.1 MFS transporter -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37785.12 Da        Isoelectric Point: 4.8247

>NTDB_id=763194 OYT13_RS21455 WP_268566911.1 4647616..4648680(-) (recA) [Pandoraea sp. XJJ-1]
MEESKKGSANLSAEKGKALAAALAQIEKQFGKGSIMRLGDSEVEADIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESS
GKTTLTLQVVAEMQKVGGTCAFIDAEHALDVGYANKLGVSVPELLISQPDTGEQALEIADALVRSGSIDLIVIDSVAALV
PKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCTVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGS
IKKGDEVVGNETRVKVVKNKVSPPFREAIFDILYGQGISREGEIIDLGVNAKIVEKAGAWYSYNGEKIGQGKDNAREFLR
ENPDIAHEIENKVRASLGVTAINETGEIETDDEV

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=763194 OYT13_RS21455 WP_268566911.1 4647616..4648680(-) (recA) [Pandoraea sp. XJJ-1]
ATGGAAGAAAGCAAGAAAGGGTCTGCCAATCTGTCGGCCGAGAAAGGCAAGGCGCTGGCCGCCGCCCTCGCGCAGATCGA
AAAGCAATTCGGCAAGGGCTCGATCATGCGTCTGGGCGACAGCGAGGTCGAAGCGGACATCCAGGTCGTCTCGACCGGCT
CGCTGGGCCTGGACATCGCGCTGGGCGTGGGTGGCTTGCCGCGTGGGCGCGTGATCGAAATCTACGGTCCGGAATCGTCG
GGTAAGACCACGCTCACGCTGCAAGTCGTGGCGGAAATGCAGAAGGTCGGTGGCACTTGCGCGTTTATCGACGCCGAGCA
CGCCCTCGATGTCGGCTACGCCAACAAACTGGGCGTGTCGGTGCCGGAACTGCTGATCTCGCAGCCGGACACGGGCGAAC
AAGCCCTCGAAATCGCCGACGCGCTGGTGCGCTCGGGCTCGATCGACCTCATCGTCATCGACTCGGTGGCGGCGCTGGTG
CCGAAGGCCGAAATCGAAGGGGAAATGGGCGATTCGCTGCCGGGTCTGCAGGCGCGTCTGATGTCCCAGGCCCTGCGCAA
GCTGACCGGTACCATCAAGCGCACGAACTGCACGGTGATCTTCATCAACCAGATTCGGATGAAGATCGGTGTGATGTTCG
GTAACCCGGAAACTACTACGGGCGGAAACGCACTGAAGTTCTACTCATCGGTGCGTCTCGACATTCGCCGGATCGGCTCG
ATCAAGAAGGGTGACGAGGTCGTCGGCAACGAAACCCGCGTCAAGGTCGTCAAGAACAAGGTGTCGCCGCCGTTCCGCGA
AGCGATTTTCGATATCCTTTATGGCCAGGGGATTTCGCGCGAAGGCGAAATCATCGATCTGGGCGTGAACGCGAAGATCG
TCGAGAAGGCTGGCGCCTGGTACAGCTACAACGGCGAGAAGATTGGTCAGGGTAAGGACAACGCGCGTGAATTCCTGCGC
GAAAATCCGGATATCGCCCACGAGATCGAAAATAAGGTACGCGCATCGCTCGGCGTCACGGCAATCAACGAGACCGGCGA
GATCGAAACAGACGACGAGGTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(17-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

85.593

100

0.856
  recA Neisseria gonorrhoeae MS11

73.547

97.175

0.715
  recA Neisseria gonorrhoeae MS11

73.547

97.175

0.715
  recA Neisseria gonorrhoeae strain FA1090

73.547

97.175

0.715
  recA Acinetobacter baylyi ADP1

71.765

96.045

0.689
  recA Acinetobacter baumannii D1279779

71.137

96.893

0.689
  recA Pseudomonas stutzeri DSM 10701

72.973

94.068

0.686
  recA Vibrio cholerae strain A1552

73.375

91.243

0.669
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.375

91.243

0.669
  recA Glaesserella parasuis strain SC1401

68.895

97.175

0.669
  recA Bacillus subtilis subsp. subtilis str. 168

65.443

92.373

0.605
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.337

92.09

0.602
  recA Helicobacter pylori 26695

64.438

92.938

0.599
  recA Helicobacter pylori strain NCTC11637

64.134

92.938

0.596
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.134

92.938

0.596
  recA Latilactobacillus sakei subsp. sakei 23K

62.059

96.045

0.596
  recA Streptococcus pneumoniae TIGR4

60

98.87

0.593
  recA Streptococcus pneumoniae Rx1

60

98.87

0.593
  recA Streptococcus pneumoniae D39

60

98.87

0.593
  recA Streptococcus pneumoniae R6

60

98.87

0.593
  recA Streptococcus mitis NCTC 12261

59.885

98.588

0.59
  recA Streptococcus mitis SK321

59.599

98.588

0.588
  recA Streptococcus mutans UA159

60.174

97.175

0.585
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60

96.045

0.576
  recA Lactococcus lactis subsp. cremoris KW2

60.725

93.503

0.568
  recA Streptococcus pyogenes NZ131

60.79

92.938

0.565