Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   OX890_RS17210 Genome accession   NZ_CP113808
Coordinates   4048958..4050025 (-) Length   355 a.a.
NCBI ID   WP_011847432.1    Uniprot ID   A3D785
Organism   Shewanella sp. DAU305     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4043958..4055025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OX890_RS17195 (OX890_17195) - 4044209..4045465 (-) 1257 WP_268649616.1 aspartate kinase -
  OX890_RS17200 (OX890_17200) alaS 4045475..4048099 (-) 2625 WP_012587110.1 alanine--tRNA ligase -
  OX890_RS17205 (OX890_17205) - 4048470..4048883 (-) 414 WP_006082605.1 regulatory protein RecX -
  OX890_RS17210 (OX890_17210) recA 4048958..4050025 (-) 1068 WP_011847432.1 recombinase RecA Machinery gene
  OX890_RS17215 (OX890_17215) mutS 4050410..4052980 (+) 2571 WP_268649617.1 DNA mismatch repair protein MutS -
  OX890_RS17220 (OX890_17220) rpoS 4053198..4054178 (-) 981 WP_006086853.1 RNA polymerase sigma factor RpoS -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 37898.44 Da        Isoelectric Point: 5.0504

>NTDB_id=763173 OX890_RS17210 WP_011847432.1 4048958..4050025(-) (recA) [Shewanella sp. DAU305]
MKVDPNKEKALAAVLIQIEKQFGKGSIMKLGEDRSMDVETISTGSLSLDVALGAGGLPMGRIVEIYGPESSGKTTLTLEV
IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVG
NETRVKVVKNKVAAPFKQAEFQILYGQGINRTGELVDLGVAHKLIEKAGAWYSYKGDKIGQGRANAGKYLTENPAIATEI
DKTLRELLLSNPSALAAKADASTEDNVDLETGEVF

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=763173 OX890_RS17210 WP_011847432.1 4048958..4050025(-) (recA) [Shewanella sp. DAU305]
ATGAAGGTCGATCCAAATAAAGAGAAAGCACTTGCTGCGGTATTGATCCAAATTGAGAAACAATTTGGTAAAGGCTCCAT
CATGAAGCTGGGCGAAGATCGCTCTATGGATGTTGAGACCATTTCTACCGGTTCTCTGTCTCTGGACGTTGCTTTAGGTG
CTGGCGGTTTGCCAATGGGTCGTATCGTTGAGATCTACGGTCCTGAATCATCAGGTAAAACGACACTGACTTTAGAAGTG
ATTGCCGCAGCGCAACGTGAAGGTAAAACCTGTGCCTTTATCGATGCTGAGCATGCACTAGACCCTATCTATGCTAAAAA
ATTAGGTGTAGATATTGATAACCTGCTGTGTTCACAACCGGATACCGGCGAGCAAGCGCTTGAGATTTGTGATGCTTTAA
CTCGCTCTGGCGCTGTTGACGTTATCGTCGTCGACTCAGTGGCGGCATTAACGCCTAAAGCTGAAATCGAAGGCGAAATT
GGTGATTCTCACATGGGCCTAGCGGCACGTATGATGAGCCAAGCCATGCGTAAACTTGCGGGTAACTTAAAGCAATCTAA
CACCTTACTTATCTTCATCAACCAAATCCGGATGAAGATTGGTGTGATGTTTGGTAACCCAGAAACGACAACCGGTGGTA
ACGCGCTGAAGTTCTATGCTTCTGTTCGTTTAGACATTCGCCGTACTGGTGCCATTAAAGACGGCGATGAAGTTGTCGGT
AACGAAACTCGCGTTAAAGTGGTGAAAAACAAGGTTGCAGCACCGTTCAAGCAAGCCGAATTCCAAATCCTTTATGGCCA
AGGTATTAACCGTACTGGTGAGTTAGTTGACTTAGGCGTAGCCCATAAGTTGATTGAAAAAGCGGGTGCTTGGTACAGTT
ATAAAGGCGATAAAATCGGTCAAGGCCGTGCTAATGCGGGTAAATATTTGACTGAAAACCCAGCCATTGCTACTGAAATT
GACAAGACATTACGTGAGTTACTTTTGAGCAATCCTAGTGCACTGGCTGCCAAAGCTGATGCTAGCACGGAAGATAATGT
TGATTTAGAAACAGGCGAAGTATTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3D785

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

81.25

99.155

0.806
  recA Vibrio cholerae O1 biovar El Tor strain E7946

81.25

99.155

0.806
  recA Pseudomonas stutzeri DSM 10701

72.254

97.465

0.704
  recA Acinetobacter baylyi ADP1

70.317

97.746

0.687
  recA Acinetobacter baumannii D1279779

68.768

98.31

0.676
  recA Glaesserella parasuis strain SC1401

68.571

98.592

0.676
  recA Ralstonia pseudosolanacearum GMI1000

69.207

92.394

0.639
  recA Neisseria gonorrhoeae MS11

69.659

90.986

0.634
  recA Neisseria gonorrhoeae MS11

69.659

90.986

0.634
  recA Neisseria gonorrhoeae strain FA1090

69.659

90.986

0.634
  recA Streptococcus pneumoniae TIGR4

63.72

92.394

0.589
  recA Streptococcus pneumoniae R6

63.72

92.394

0.589
  recA Streptococcus pneumoniae D39

63.72

92.394

0.589
  recA Streptococcus pneumoniae Rx1

63.72

92.394

0.589
  recA Streptococcus mitis NCTC 12261

63.11

92.394

0.583
  recA Streptococcus mitis SK321

62.805

92.394

0.58
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.562

93.803

0.577
  recA Streptococcus pyogenes NZ131

61.89

92.394

0.572
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.346

91.268

0.569
  recA Streptococcus mutans UA159

61.585

92.394

0.569
  recA Bacillus subtilis subsp. subtilis str. 168

62.617

90.423

0.566
  recA Helicobacter pylori strain NCTC11637

60.542

93.521

0.566
  recA Helicobacter pylori 26695

60.241

93.521

0.563
  recA Lactococcus lactis subsp. cremoris KW2

60.061

92.394

0.555
  recA Latilactobacillus sakei subsp. sakei 23K

61.755

89.859

0.555
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.27

88.732

0.544