Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   OY559_RS13290 Genome accession   NZ_CP113783
Coordinates   2814450..2815484 (-) Length   344 a.a.
NCBI ID   WP_277726719.1    Uniprot ID   -
Organism   Pseudoxanthomonas sp. SE1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2809450..2820484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OY559_RS13275 (OY559_13285) csrA 2810800..2811009 (-) 210 WP_142124622.1 carbon storage regulator CsrA -
  OY559_RS13280 (OY559_13290) alaS 2811159..2813810 (-) 2652 WP_277726717.1 alanine--tRNA ligase -
  OY559_RS13285 (OY559_13295) recX 2813904..2814419 (-) 516 WP_277726718.1 recombination regulator RecX -
  OY559_RS13290 (OY559_13300) recA 2814450..2815484 (-) 1035 WP_277726719.1 recombinase RecA Machinery gene
  OY559_RS13295 (OY559_13305) lexA 2815662..2816303 (-) 642 WP_277726720.1 transcriptional repressor LexA -
  OY559_RS13300 (OY559_13310) - 2816352..2818037 (-) 1686 WP_277726721.1 AarF/UbiB family protein -
  OY559_RS13305 (OY559_13315) - 2818069..2818560 (-) 492 WP_277726722.1 CinA family protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 37221.71 Da        Isoelectric Point: 5.1946

>NTDB_id=763040 OY559_RS13290 WP_277726719.1 2814450..2815484(-) (recA) [Pseudoxanthomonas sp. SE1]
MDENKKRALSAALTQIERQFGKGSVMRMGDRVIEPVEIIPTGSLMLDIALGIGGLPRGRVVEIYGPESSGKTTLTLQAIA
QCQKQGGTAAFIDAEHALDPIYAAKLGVNVDDLLLSQPDTGEQALEIADMLVRSGSVDIVVIDSVAALTPKAEIEGEMGD
QLPGLQARLMSQALRKLTGNIKRSNTTVIFINQLRMKIGVMMPGQSPETTTGGNALKFYASVRLDIRRIGAIKKGDEIIG
NQTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIDMGVEAKLVEKAGAWYSYGSERIGQGKDNSRTFLRENPAIAAKL
ESELREKFQPAEAQREESADNDGE

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=763040 OY559_RS13290 WP_277726719.1 2814450..2815484(-) (recA) [Pseudoxanthomonas sp. SE1]
ATGGATGAGAACAAGAAGCGCGCCCTTTCCGCCGCATTGACCCAGATCGAGCGCCAGTTCGGCAAGGGCTCGGTGATGCG
CATGGGAGACCGGGTCATCGAGCCCGTGGAAATCATCCCCACCGGCTCGCTGATGCTGGACATTGCCTTGGGCATCGGTG
GACTGCCGCGTGGTCGCGTGGTGGAGATCTACGGTCCTGAATCCTCCGGCAAGACCACCCTGACCCTGCAGGCCATCGCC
CAGTGCCAGAAGCAGGGTGGCACCGCCGCATTCATCGACGCCGAGCATGCGCTGGACCCGATCTACGCCGCCAAGCTGGG
CGTGAACGTGGATGACCTGCTCCTGTCGCAGCCGGATACCGGCGAACAGGCGCTGGAAATCGCCGACATGCTGGTGCGTT
CCGGCTCCGTCGACATCGTGGTCATCGACTCCGTGGCGGCGCTGACGCCGAAGGCCGAGATCGAAGGCGAGATGGGCGAC
CAGCTGCCGGGCCTGCAGGCACGCCTGATGAGCCAGGCCCTGCGCAAGCTCACCGGCAACATCAAGCGCTCGAACACCAC
CGTCATCTTCATCAACCAGTTGCGCATGAAGATCGGTGTGATGATGCCCGGCCAGAGCCCCGAGACCACCACTGGCGGCA
ATGCGCTGAAGTTCTACGCCTCGGTCCGTCTGGACATCCGCCGCATCGGTGCCATCAAGAAGGGCGACGAGATCATCGGC
AACCAGACCAAGATCAAGGTGGTCAAGAACAAGCTGGCGCCTCCGTTCAAGCAGGTCGTCACCGAGATCCTCTATGGCGA
AGGCATCAGTCGCGAAGGTGAACTGATCGATATGGGCGTGGAAGCCAAGCTGGTAGAGAAGGCGGGCGCCTGGTACAGCT
ACGGCAGCGAGCGCATCGGCCAGGGCAAGGACAATTCCCGGACCTTCCTGCGCGAGAATCCTGCCATTGCCGCCAAGCTG
GAGTCCGAACTGCGCGAGAAGTTCCAGCCCGCCGAAGCGCAGCGCGAAGAAAGTGCGGACAACGACGGCGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

76.677

90.988

0.698
  recA Acinetobacter baylyi ADP1

71.646

95.349

0.683
  recA Acinetobacter baumannii D1279779

71.341

95.349

0.68
  recA Pseudomonas stutzeri DSM 10701

71.341

95.349

0.68
  recA Vibrio cholerae strain A1552

71.166

94.767

0.674
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.166

94.767

0.674
  recA Glaesserella parasuis strain SC1401

65.116

100

0.651
  recA Neisseria gonorrhoeae MS11

68.405

94.767

0.648
  recA Neisseria gonorrhoeae strain FA1090

68.405

94.767

0.648
  recA Neisseria gonorrhoeae MS11

68.405

94.767

0.648
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.919

100

0.619
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.976

97.093

0.602
  recA Bacillus subtilis subsp. subtilis str. 168

63.692

94.477

0.602
  recA Latilactobacillus sakei subsp. sakei 23K

62.31

95.64

0.596
  recA Helicobacter pylori strain NCTC11637

61.145

96.512

0.59
  recA Helicobacter pylori 26695

60.843

96.512

0.587
  recA Streptococcus mitis SK321

57.759

100

0.584
  recA Streptococcus mitis NCTC 12261

57.759

100

0.584
  recA Streptococcus pneumoniae D39

60.671

95.349

0.578
  recA Streptococcus pneumoniae R6

60.671

95.349

0.578
  recA Streptococcus pneumoniae Rx1

60.671

95.349

0.578
  recA Streptococcus pneumoniae TIGR4

60.671

95.349

0.578
  recA Streptococcus mutans UA159

60

95.93

0.576
  recA Streptococcus pyogenes NZ131

59.091

95.93

0.567
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.182

95.93

0.558
  recA Lactococcus lactis subsp. cremoris KW2

58.769

94.477

0.555