Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   OU800_RS09400 Genome accession   NZ_CP113519
Coordinates   2075783..2076832 (+) Length   349 a.a.
NCBI ID   WP_268183187.1    Uniprot ID   -
Organism   Pseudomonas sp. GOM7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2070783..2081832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OU800_RS09380 (OU800_09380) - 2070877..2071512 (-) 636 WP_268183178.1 VOC family protein -
  OU800_RS09385 (OU800_09385) mdeB 2071559..2074228 (-) 2670 WP_268183180.1 alpha-ketoglutarate dehydrogenase -
  OU800_RS09390 (OU800_09390) - 2074361..2075101 (+) 741 WP_268183183.1 TetR/AcrR family transcriptional regulator -
  OU800_RS09395 (OU800_09395) - 2075195..2075695 (+) 501 WP_268183185.1 CinA family protein -
  OU800_RS09400 (OU800_09400) recA 2075783..2076832 (+) 1050 WP_268183187.1 recombinase RecA Machinery gene
  OU800_RS09405 (OU800_09405) recX 2076837..2077304 (+) 468 WP_268183188.1 recombination regulator RecX -
  OU800_RS09410 (OU800_09410) - 2077301..2078176 (-) 876 WP_268183189.1 DUF6685 family protein -
  OU800_RS09415 (OU800_09415) - 2078303..2078524 (+) 222 WP_268183192.1 DUF2835 domain-containing protein -
  OU800_RS09420 (OU800_09420) - 2078622..2079644 (+) 1023 WP_268183193.1 quinone-dependent dihydroorotate dehydrogenase -
  OU800_RS09425 (OU800_09425) rmf 2079779..2079994 (-) 216 WP_003244273.1 ribosome modulation factor -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37265.68 Da        Isoelectric Point: 5.3157

>NTDB_id=762680 OU800_RS09400 WP_268183187.1 2075783..2076832(+) (recA) [Pseudomonas sp. GOM7]
MDENKKRALAAALGQIEKQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
EAQKLGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
QHVGLQARLMSQALRKITGNIKTANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGAVKEGDEVVGSE
TRVKIVKNKVAPPFRQAEFQILYGKGIYRNGEIIDLGVQQNLVEKSGAWYSYQGNKIGQGKANAAKYLEDNPAVAREIEG
LIREKLLVSSAPVKATAAAAEVEDAEVDF

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=762680 OU800_RS09400 WP_268183187.1 2075783..2076832(+) (recA) [Pseudomonas sp. GOM7]
ATGGACGAGAACAAGAAGCGCGCCTTGGCGGCTGCCCTGGGCCAGATCGAGAAGCAGTTCGGCAAGGGCGCGGTGATGCG
CATGGGCGACCATGATCGCCAGGCCATTCCGGCCATTTCCACCGGCTCGCTGGGCCTGGACATTGCGCTGGGCATCGGTG
GCCTGCCCAAGGGCCGCATCGTCGAGATCTACGGCCCGGAGTCCTCGGGTAAGACCACCCTGACCCTGTCGGTGATCGCC
GAGGCGCAGAAACTCGGCGCCACCTGTGCCTTCGTCGATGCCGAGCACGCGCTCGATCCCGACTACGCCGGCAAACTGGG
CGTGAATGTCGACGACCTGCTAGTGTCGCAGCCGGATACCGGCGAGCAGGCTCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCTGTCGACGTGATCATCGTCGACTCCGTGGCGGCCCTGGTGCCCAAGGCCGAGATCGAAGGCGAGATGGGCGAT
CAGCACGTCGGCCTGCAGGCCCGTCTGATGAGCCAGGCGCTGCGCAAGATCACCGGCAACATCAAGACCGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCTC
TGAAGTTCTACTCCTCGGTACGCCTGGACATCCGCCGTACCGGCGCGGTGAAGGAAGGCGACGAGGTGGTGGGCAGCGAA
ACCCGCGTGAAGATCGTCAAGAACAAGGTGGCGCCGCCGTTCCGCCAGGCCGAGTTCCAGATTCTCTACGGCAAGGGCAT
CTACCGTAACGGCGAGATCATCGACCTCGGCGTGCAGCAGAATCTGGTGGAGAAATCCGGTGCCTGGTACAGCTACCAGG
GCAACAAGATCGGTCAGGGCAAGGCCAATGCCGCCAAGTACCTCGAGGACAACCCGGCCGTCGCCCGTGAGATCGAAGGC
CTGATCCGCGAGAAGCTGCTGGTCAGCAGCGCGCCGGTAAAAGCCACCGCTGCCGCCGCCGAGGTGGAAGACGCCGAAGT
CGACTTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

90.778

99.427

0.903
  recA Acinetobacter baylyi ADP1

75.291

98.567

0.742
  recA Acinetobacter baumannii D1279779

74.277

99.14

0.736
  recA Vibrio cholerae strain A1552

74.618

93.696

0.699
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.618

93.696

0.699
  recA Glaesserella parasuis strain SC1401

69.253

99.713

0.691
  recA Ralstonia pseudosolanacearum GMI1000

72.948

94.269

0.688
  recA Neisseria gonorrhoeae MS11

71.296

92.837

0.662
  recA Neisseria gonorrhoeae MS11

71.296

92.837

0.662
  recA Neisseria gonorrhoeae strain FA1090

71.296

92.837

0.662
  recA Helicobacter pylori strain NCTC11637

64.22

93.696

0.602
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.22

93.696

0.602
  recA Helicobacter pylori 26695

63.609

93.696

0.596
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.275

95.702

0.596
  recA Bacillus subtilis subsp. subtilis str. 168

62.617

91.977

0.576
  recA Latilactobacillus sakei subsp. sakei 23K

59.394

94.556

0.562
  recA Streptococcus mutans UA159

59.077

93.123

0.55
  recA Streptococcus pyogenes NZ131

58.232

93.983

0.547
  recA Streptococcus mitis SK321

58.824

92.55

0.544
  recA Streptococcus mitis NCTC 12261

58.514

92.55

0.542
  recA Streptococcus pneumoniae Rx1

57.975

93.41

0.542
  recA Streptococcus pneumoniae D39

57.975

93.41

0.542
  recA Streptococcus pneumoniae R6

57.975

93.41

0.542
  recA Streptococcus pneumoniae TIGR4

57.975

93.41

0.542
  recA Lactococcus lactis subsp. cremoris KW2

56.656

92.55

0.524
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.183

93.983

0.519