Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NM686_RS03590 Genome accession   NZ_CP113517
Coordinates   748142..749197 (+) Length   351 a.a.
NCBI ID   WP_255186519.1    Uniprot ID   -
Organism   Methylomonas rapida strain MP1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 743142..754197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NM686_RS03575 (NM686_003575) - 744987..746531 (+) 1545 WP_255186516.1 2-isopropylmalate synthase -
  NM686_RS03580 (NM686_003580) - 746540..747466 (+) 927 WP_255186517.1 uracil-DNA glycosylase family protein -
  NM686_RS03585 (NM686_003585) rimI 747475..748029 (+) 555 WP_255186518.1 ribosomal protein S18-alanine N-acetyltransferase -
  NM686_RS03590 (NM686_003590) recA 748142..749197 (+) 1056 WP_255186519.1 recombinase RecA Machinery gene
  NM686_RS03595 (NM686_003595) - 749160..749714 (+) 555 WP_255186520.1 regulatory protein RecX -
  NM686_RS03600 (NM686_003600) - 749786..750565 (+) 780 WP_255186521.1 hypothetical protein -
  NM686_RS03605 (NM686_003605) - 750558..751499 (+) 942 WP_255186522.1 site-specific DNA-methyltransferase -
  NM686_RS03610 (NM686_003610) alaS 751581..754181 (+) 2601 WP_407942381.1 alanine--tRNA ligase -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 37794.23 Da        Isoelectric Point: 4.9461

>NTDB_id=762649 NM686_RS03590 WP_255186519.1 748142..749197(+) (recA) [Methylomonas rapida strain MP1]
MDENKKKALGAALMQIEKQFGKGSVMRMGDVAATRDIEVVSTGSLSVDIALGCGGLPRGRIIEIYGPESSGKTTLTLQTI
AQVQKLGGTAAFVDAEHALDPVYAQKIGVNIDDLLVSQPDTGEQALEITDMLVRSGAVDIVVIDSVAALTPKAEIEGDMG
DSHMGLQARLMSQALRKLTANIKRSNTLVIFINQLRMKIGVMFGNPETTTGGNALKFYASVRMDIRRIGAIKKGDEVIGN
ETRVKIVKNKVAPPFKQADFEILYGEGVSFYGELVDLGVEYGFVQKSGSWYSYGDEKIGQGKDNAKQFLKDNPNKAAELE
KAIREKAFAKLATLPATAPDAEDDAEFIDGD

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=762649 NM686_RS03590 WP_255186519.1 748142..749197(+) (recA) [Methylomonas rapida strain MP1]
ATGGACGAGAACAAGAAAAAGGCGCTGGGCGCCGCATTGATGCAAATCGAAAAACAATTCGGCAAAGGCTCTGTGATGCG
GATGGGCGACGTAGCCGCCACCCGCGACATCGAAGTCGTGTCGACTGGTTCTTTGTCGGTGGACATCGCTTTGGGCTGCG
GCGGCTTGCCACGCGGCCGTATCATCGAAATCTACGGCCCGGAATCGTCCGGCAAAACCACGTTGACGCTGCAAACCATC
GCTCAGGTGCAGAAATTGGGCGGCACCGCGGCCTTCGTCGATGCCGAGCATGCACTCGACCCTGTCTATGCGCAGAAAAT
CGGCGTCAACATCGACGACTTGCTGGTGTCGCAGCCGGATACCGGCGAGCAGGCGCTGGAAATCACCGATATGCTGGTCC
GCTCGGGCGCGGTCGATATCGTTGTCATCGACTCGGTGGCGGCCTTGACGCCGAAAGCCGAAATCGAAGGCGACATGGGC
GACTCCCACATGGGCTTGCAAGCGCGTTTGATGTCGCAAGCCCTGCGTAAGCTAACCGCCAACATCAAGCGCTCGAATAC
TCTGGTGATATTCATTAACCAGCTCAGGATGAAGATCGGCGTGATGTTTGGCAATCCGGAAACCACCACCGGCGGTAATG
CGCTGAAATTCTATGCCTCGGTGCGGATGGATATCCGCCGCATTGGTGCGATCAAGAAAGGCGACGAGGTGATCGGCAAC
GAGACTCGGGTCAAAATCGTCAAAAACAAAGTCGCACCGCCCTTCAAGCAAGCCGATTTCGAGATTTTGTACGGCGAAGG
TGTCTCTTTCTACGGAGAACTGGTTGATCTGGGAGTTGAATACGGCTTTGTGCAGAAATCCGGCTCTTGGTACAGCTACG
GCGATGAAAAAATCGGCCAAGGCAAGGATAATGCCAAACAATTTTTGAAAGACAACCCGAATAAAGCCGCCGAACTGGAA
AAGGCGATTCGAGAAAAAGCCTTTGCCAAGTTAGCGACGCTGCCGGCGACAGCCCCCGATGCAGAAGACGACGCCGAGTT
CATCGACGGCGATTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

71.676

98.575

0.707
  recA Acinetobacter baumannii D1279779

70.809

98.575

0.698
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.402

99.145

0.698
  recA Vibrio cholerae strain A1552

70.402

99.145

0.698
  recA Acinetobacter baylyi ADP1

69.341

99.43

0.689
  recA Glaesserella parasuis strain SC1401

69.565

98.291

0.684
  recA Ralstonia pseudosolanacearum GMI1000

73.871

88.319

0.652
  recA Neisseria gonorrhoeae MS11

70.062

92.308

0.647
  recA Neisseria gonorrhoeae MS11

70.062

92.308

0.647
  recA Neisseria gonorrhoeae strain FA1090

70.062

92.308

0.647
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.766

95.157

0.635
  recA Bacillus subtilis subsp. subtilis str. 168

67.391

91.738

0.618
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.615

92.593

0.598
  recA Streptococcus pneumoniae R6

62.577

92.877

0.581
  recA Streptococcus mutans UA159

62.577

92.877

0.581
  recA Streptococcus pneumoniae TIGR4

62.577

92.877

0.581
  recA Streptococcus pneumoniae Rx1

62.577

92.877

0.581
  recA Streptococcus pneumoniae D39

62.577

92.877

0.581
  recA Streptococcus mitis SK321

62.963

92.308

0.581
  recA Helicobacter pylori strain NCTC11637

60.417

95.726

0.578
  recA Streptococcus pyogenes NZ131

61.89

93.447

0.578
  recA Streptococcus mitis NCTC 12261

62.654

92.308

0.578
  recA Latilactobacillus sakei subsp. sakei 23K

63.043

91.738

0.578
  recA Helicobacter pylori 26695

60.119

95.726

0.575
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.909

94.017

0.573
  recA Lactococcus lactis subsp. cremoris KW2

60.494

92.308

0.558