Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   OSV15_RS08220 Genome accession   NZ_CP113257
Coordinates   1668057..1669100 (+) Length   347 a.a.
NCBI ID   WP_046622304.1    Uniprot ID   A0AA47I0C1
Organism   Stutzerimonas frequens strain TF18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1669784..1686373 1668057..1669100 flank 684


Gene organization within MGE regions


Location: 1668057..1686373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSV15_RS08220 (OSV15_08220) recA 1668057..1669100 (+) 1044 WP_046622304.1 recombinase RecA Machinery gene
  OSV15_RS08225 (OSV15_08225) - 1669414..1669620 (-) 207 WP_232964074.1 helix-turn-helix domain-containing protein -
  OSV15_RS08230 (OSV15_08230) - 1669784..1670221 (+) 438 WP_198757100.1 hypothetical protein -
  OSV15_RS08235 (OSV15_08235) - 1670233..1670616 (+) 384 WP_198757099.1 hypothetical protein -
  OSV15_RS08240 (OSV15_08240) - 1670644..1671075 (+) 432 WP_198757098.1 DUF6957 family protein -
  OSV15_RS08245 (OSV15_08245) - 1671576..1671782 (-) 207 WP_232964080.1 hypothetical protein -
  OSV15_RS08250 (OSV15_08250) - 1671717..1672391 (+) 675 WP_232964077.1 inositol monophosphatase family protein -
  OSV15_RS08255 (OSV15_08255) - 1672585..1673463 (+) 879 WP_003152809.1 DUF2971 domain-containing protein -
  OSV15_RS08260 (OSV15_08260) - 1673604..1673807 (-) 204 WP_008567188.1 antitoxin Xre/MbcA/ParS toxin-binding domain-containing protein -
  OSV15_RS08265 (OSV15_08265) - 1674042..1674545 (+) 504 WP_008567187.1 hypothetical protein -
  OSV15_RS08270 (OSV15_08270) - 1674617..1674970 (+) 354 WP_008567186.1 hypothetical protein -
  OSV15_RS08275 (OSV15_08275) - 1674988..1675175 (-) 188 Protein_1636 DUF4113 domain-containing protein -
  OSV15_RS08280 (OSV15_08280) merR 1675534..1675944 (-) 411 WP_008567182.1 Hg(II)-responsive transcriptional regulator -
  OSV15_RS08285 (OSV15_08285) merT 1676016..1676366 (+) 351 WP_008567181.1 mercuric ion transporter MerT -
  OSV15_RS08290 (OSV15_08290) merP 1676380..1676655 (+) 276 WP_008567180.1 mercury resistance system periplasmic binding protein MerP -
  OSV15_RS08295 (OSV15_08295) merC 1676668..1677102 (+) 435 WP_267932484.1 organomercurial transporter MerC -
  OSV15_RS08300 (OSV15_08300) merA 1677135..1678817 (+) 1683 WP_008567178.1 mercury(II) reductase -
  OSV15_RS08305 (OSV15_08305) - 1678836..1679252 (+) 417 WP_008567175.1 hypothetical protein -
  OSV15_RS08310 (OSV15_08310) - 1679666..1680772 (+) 1107 WP_234461661.1 DUF4113 domain-containing protein -
  OSV15_RS08315 (OSV15_08315) - 1680946..1682235 (-) 1290 WP_198757392.1 site-specific integrase -
  OSV15_RS08320 (OSV15_08320) - 1682232..1682807 (-) 576 WP_157754395.1 hypothetical protein -
  OSV15_RS08325 (OSV15_08325) - 1682773..1684635 (-) 1863 WP_198757391.1 hypothetical protein -
  OSV15_RS08330 (OSV15_08330) - 1684628..1686373 (-) 1746 WP_198757390.1 hypothetical protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37208.76 Da        Isoelectric Point: 5.3044

>NTDB_id=761309 OSV15_RS08220 WP_046622304.1 1668057..1669100(+) (recA) [Stutzerimonas frequens strain TF18]
MDQAKNKALEMALSQIEKQFGKGAIMRLGSDRTMDIDVVSTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLTLSVIA
EAQRQGLTCAFVDAEHALDPIYAAKLGVNIDDLLCSQPDTGEQALEIVDILTRSGAVNVIVVDSVAALVPKAEIEGEIGD
SHVGLAARMMSQAMRKITGNLKNSNTMCIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVAAPFRQAEFQILYGHGISKAGEIVDLAVANNFVEKAGAWYSFEGNKIGQGKANTMKWLMENKATMDKLEG
MIRDKLMSKPQPETSANLSALEEPADD

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=761309 OSV15_RS08220 WP_046622304.1 1668057..1669100(+) (recA) [Stutzerimonas frequens strain TF18]
ATGGATCAGGCAAAAAACAAAGCGTTGGAAATGGCTCTTTCTCAGATAGAGAAACAGTTTGGCAAGGGCGCCATAATGCG
GCTCGGCTCAGACCGGACAATGGATATCGATGTTGTTTCGACAGGTTCCCTTGGTCTCGACATCGCTTTGGGCGTGGGTG
GTCTGCCGCGTGGTCGTATTGTTGAGATCTACGGGCCAGAGTCCTCTGGTAAAACTACCCTCACTCTTTCGGTTATTGCC
GAAGCTCAGCGTCAAGGTTTGACCTGTGCATTCGTGGATGCCGAACATGCTCTTGATCCAATCTACGCAGCTAAACTCGG
TGTAAACATTGATGACCTCCTGTGCTCGCAGCCAGATACCGGTGAACAGGCTCTTGAGATCGTAGACATATTGACTCGTT
CGGGTGCGGTTAACGTAATTGTTGTCGATTCCGTTGCTGCGCTTGTTCCAAAGGCAGAGATCGAAGGGGAGATCGGCGAT
TCCCATGTTGGCCTTGCCGCGCGAATGATGTCTCAGGCGATGCGGAAGATTACTGGTAACCTGAAAAATTCCAACACCAT
GTGTATCTTCATCAATCAGATTCGCATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TCAAGTTCTACGCCTCGGTGCGTCTGGATATCCGCCGTACCGGCGCGGTGAAGGAAGGCGACGAAGTGGTCGGTAGTGAA
ACACGCGTCAAGGTTGTCAAGAACAAAGTCGCTGCTCCATTCAGGCAAGCAGAATTCCAGATTCTCTACGGCCATGGCAT
CAGCAAGGCGGGTGAGATCGTTGATCTAGCTGTTGCAAATAATTTCGTTGAAAAGGCTGGCGCCTGGTACTCCTTCGAGG
GTAATAAAATTGGCCAAGGTAAAGCTAATACCATGAAGTGGCTTATGGAAAACAAGGCTACCATGGACAAGCTGGAAGGC
ATGATTCGCGACAAGCTGATGTCGAAGCCACAGCCTGAAACATCTGCCAACCTATCCGCTCTAGAAGAGCCGGCTGACGA
CTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

75.882

97.983

0.744
  recA Vibrio cholerae strain A1552

71.47

100

0.715
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.47

100

0.715
  recA Acinetobacter baylyi ADP1

70.64

99.135

0.7
  recA Glaesserella parasuis strain SC1401

68.605

99.135

0.68
  recA Acinetobacter baumannii D1279779

71.341

94.524

0.674
  recA Neisseria gonorrhoeae MS11

68.827

93.372

0.643
  recA Neisseria gonorrhoeae MS11

68.827

93.372

0.643
  recA Neisseria gonorrhoeae strain FA1090

68.827

93.372

0.643
  recA Ralstonia pseudosolanacearum GMI1000

69.524

90.778

0.631
  recA Bacillus subtilis subsp. subtilis str. 168

63.438

92.219

0.585
  recA Helicobacter pylori strain NCTC11637

60.059

97.406

0.585
  recA Helicobacter pylori 26695

59.763

97.406

0.582
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.94

95.677

0.573
  recA Streptococcus pyogenes NZ131

57.061

100

0.571
  recA Streptococcus mutans UA159

57.061

100

0.571
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.55

94.236

0.571
  recA Streptococcus pneumoniae Rx1

60.429

93.948

0.568
  recA Streptococcus pneumoniae D39

60.429

93.948

0.568
  recA Streptococcus pneumoniae R6

60.429

93.948

0.568
  recA Streptococcus pneumoniae TIGR4

60.429

93.948

0.568
  recA Streptococcus mitis NCTC 12261

60.372

93.084

0.562
  recA Streptococcus mitis SK321

60.062

93.084

0.559
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.077

93.66

0.553
  recA Latilactobacillus sakei subsp. sakei 23K

58.934

91.931

0.542
  recA Lactococcus lactis subsp. cremoris KW2

57.585

93.084

0.536