Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   OOK74_RS02135 Genome accession   NZ_CP113241
Coordinates   435590..436651 (+) Length   353 a.a.
NCBI ID   WP_278183036.1    Uniprot ID   -
Organism   Vibrio sp. gvc     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 430590..441651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OOK74_RS02110 cysP 430916..431917 (+) 1002 WP_274722374.1 thiosulfate ABC transporter substrate-binding protein CysP -
  OOK74_RS02115 cysT 431988..432836 (+) 849 WP_278183034.1 sulfate/thiosulfate ABC transporter permease CysT -
  OOK74_RS02120 cysW 432848..433711 (+) 864 WP_274722376.1 sulfate ABC transporter permease subunit CysW -
  OOK74_RS02125 - 433708..434838 (+) 1131 WP_278183035.1 sulfate/molybdate ABC transporter ATP-binding protein -
  OOK74_RS02130 - 434953..435459 (+) 507 WP_274722378.1 nicotinamide-nucleotide amidohydrolase family protein -
  OOK74_RS02135 recA 435590..436651 (+) 1062 WP_278183036.1 recombinase RecA Machinery gene
  OOK74_RS02140 recX 436765..437223 (+) 459 WP_274722380.1 recombination regulator RecX -
  OOK74_RS02145 alaS 437436..440018 (+) 2583 WP_278183037.1 alanine--tRNA ligase -
  OOK74_RS02150 - 440223..441410 (+) 1188 WP_274722382.1 aspartate kinase -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38062.65 Da        Isoelectric Point: 5.0688

>NTDB_id=761091 OOK74_RS02135 WP_278183036.1 435590..436651(+) (recA) [Vibrio sp. gvc]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRTMDVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIA
AAQRESKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNE
TRIKVVKNKIAAPFKEAHTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSCNGDKIGQGKANACKYLKENPVIASALDK
KLRDMLLNPENMQLTEETSAAVDEAEFGAAEEF

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=761091 OOK74_RS02135 WP_278183036.1 435590..436651(+) (recA) [Vibrio sp. gvc]
ATGGACGAGAATAAACAAAAGGCACTTGCGGCTGCCCTTGGTCAAATTGAAAAACAATTTGGTAAAGGTTCCATCATGCG
TTTAGGTGATAACCGCACGATGGATGTAGAAACCATATCGACCGGCTCATTGTCTCTGGATATCGCCTTAGGTGCGGGTG
GTTTGCCGATGGGACGTATTGTTGAGATTTTCGGCCCAGAATCTTCCGGTAAAACCACTCTAACTTTGGAACTGATTGCC
GCGGCGCAACGCGAAAGCAAAACCTGTGCTTTTATCGATGCTGAGCACGCTTTGGATCCGGTATATGCCAAAAAGCTGGG
CGTGAATATTGATGAGTTACTGGTTTCTCAGCCAGATACTGGCGAACAAGCGCTAGAGATTTGTGATGCTTTAGCTCGCT
CTGGTGCGGTGGATGTGATTGTGGTCGACTCTGTCGCAGCCTTGACACCAAAAGCGGAAATTGAAGGTGAGATGGGCGAC
AGCCACATGGGTCTGCAAGCGCGCATGCTGTCACAAGCGATGCGCAAGCTAACCGGTAACCTCAAGCAGTCCAACTGTAT
GTGTATCTTTATCAACCAGATTCGGATGAAGATTGGGGTAATGTTTGGCAACCCAGAAACCACCACCGGTGGTAACGCAT
TGAAATTTTACGCTTCGGTTCGTTTAGATATTCGTCGTACTGGTGCCATCAAAGAAGGTGATGAAGTCGTCGGTAACGAA
ACTCGGATCAAAGTGGTGAAGAATAAGATTGCTGCACCTTTTAAAGAAGCCCATACGCAAATCATGTATGGCCAAGGTTT
TAACCGCGAAGGTGAATTAATTGATCTTGGCGTTAAGCATAAAATGGTTGAAAAATCAGGTGCTTGGTATAGTTGTAATG
GCGATAAAATTGGCCAAGGGAAAGCGAACGCTTGTAAATATCTGAAAGAGAATCCAGTGATCGCTAGTGCGCTAGACAAA
AAGCTGCGTGATATGTTGCTAAACCCAGAAAATATGCAATTGACCGAGGAAACCTCTGCGGCCGTTGATGAGGCAGAATT
TGGTGCTGCCGAAGAGTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

95.198

100

0.955
  recA Vibrio cholerae O1 biovar El Tor strain E7946

95.198

100

0.955
  recA Pseudomonas stutzeri DSM 10701

75.229

92.635

0.697
  recA Glaesserella parasuis strain SC1401

69.516

99.433

0.691
  recA Acinetobacter baylyi ADP1

70.52

98.017

0.691
  recA Acinetobacter baumannii D1279779

73.089

92.635

0.677
  recA Neisseria gonorrhoeae MS11

67.151

97.45

0.654
  recA Neisseria gonorrhoeae MS11

67.151

97.45

0.654
  recA Neisseria gonorrhoeae strain FA1090

67.151

97.45

0.654
  recA Ralstonia pseudosolanacearum GMI1000

70.418

88.102

0.62
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.691

92.635

0.581
  recA Helicobacter pylori strain NCTC11637

59.882

96.034

0.575
  recA Helicobacter pylori 26695

59.587

96.034

0.572
  recA Bacillus subtilis subsp. subtilis str. 168

62.928

90.935

0.572
  recA Streptococcus pneumoniae D39

62.229

91.501

0.569
  recA Streptococcus pneumoniae TIGR4

62.229

91.501

0.569
  recA Streptococcus pneumoniae Rx1

62.229

91.501

0.569
  recA Streptococcus pneumoniae R6

62.229

91.501

0.569
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.241

94.051

0.567
  recA Streptococcus mitis NCTC 12261

61.61

91.501

0.564
  recA Streptococcus mitis SK321

61.3

91.501

0.561
  recA Streptococcus mutans UA159

60.615

92.068

0.558
  recA Streptococcus pyogenes NZ131

60.308

92.068

0.555
  recA Lactococcus lactis subsp. cremoris KW2

60.372

91.501

0.552
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.509

92.351

0.55
  recA Latilactobacillus sakei subsp. sakei 23K

60.125

90.935

0.547