Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   OVN20_RS11555 Genome accession   NZ_CP113090
Coordinates   2402044..2403114 (-) Length   356 a.a.
NCBI ID   WP_267737538.1    Uniprot ID   A0A9E8ML76
Organism   Microcella daejeonensis strain MMS21-STM26     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2397044..2408114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OVN20_RS11535 (OVN20_11535) dapF 2397723..2398601 (-) 879 WP_267737533.1 diaminopimelate epimerase -
  OVN20_RS11540 (OVN20_11540) miaA 2398611..2399546 (-) 936 WP_267737534.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  OVN20_RS11545 (OVN20_11545) miaB 2399543..2401156 (-) 1614 WP_267737535.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  OVN20_RS11550 (OVN20_11550) - 2401184..2401966 (-) 783 WP_267737537.1 regulatory protein RecX -
  OVN20_RS11555 (OVN20_11555) recA 2402044..2403114 (-) 1071 WP_267737538.1 recombinase RecA Machinery gene
  OVN20_RS11560 (OVN20_11560) - 2403409..2403633 (-) 225 WP_267737539.1 DUF3046 domain-containing protein -
  OVN20_RS11565 (OVN20_11565) - 2403746..2404054 (-) 309 WP_267737540.1 helix-turn-helix domain-containing protein -
  OVN20_RS11570 (OVN20_11570) - 2404161..2404679 (-) 519 WP_267737541.1 CinA family protein -
  OVN20_RS11575 (OVN20_11575) pgsA 2404687..2405319 (-) 633 WP_267737542.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 37877.34 Da        Isoelectric Point: 6.1646

>NTDB_id=760130 OVN20_RS11555 WP_267737538.1 2402044..2403114(-) (recA) [Microcella daejeonensis strain MMS21-STM26]
MPSPADREKALETALAQIDRQFGKGSVMRLGSDERAPVAVIPTGSIALDVALGIGGLPKGRIIEIYGPESSGKTTLTLHA
IANVQKAGGIAAFIDAEHALDPDYAQKLGVDIDQLLVSQPDTGEQALEIADMLVRSGSIDLVVIDSVAALVPRAEIEGEM
GDSHVGLQARLMSQALRKLTGGLNQTQTSMIFINQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTDAVG
NRTRVKVVKNKMAPPFKQAEFDILYGIGISREGSLIDFGVEHEIVRKSGAWYTYDGDQLGQGKENARRYLLDNPATAQEI
ENKILAKLGIGAAPAAAPAAVESIQPKIAQRKAAGA

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=760130 OVN20_RS11555 WP_267737538.1 2402044..2403114(-) (recA) [Microcella daejeonensis strain MMS21-STM26]
ATGCCCTCACCTGCAGACCGCGAGAAGGCCCTCGAGACCGCCCTCGCTCAGATCGACCGTCAGTTCGGCAAGGGCAGCGT
CATGCGCCTCGGCTCCGACGAGCGCGCCCCCGTGGCGGTGATCCCGACCGGCTCGATCGCCCTCGACGTCGCCCTCGGCA
TCGGCGGGCTCCCCAAGGGGCGCATCATCGAGATCTACGGCCCCGAGTCCTCCGGTAAGACCACGCTCACGCTGCACGCG
ATCGCGAACGTGCAGAAGGCCGGCGGCATCGCCGCGTTCATCGACGCCGAGCACGCCCTCGACCCCGACTACGCGCAGAA
GCTCGGCGTCGACATCGATCAGCTGCTCGTCTCGCAGCCCGACACGGGTGAGCAGGCGCTCGAGATCGCCGACATGCTCG
TGCGATCGGGCTCCATCGATCTCGTGGTCATCGACTCGGTGGCCGCGCTCGTGCCCCGCGCCGAGATCGAGGGCGAGATG
GGCGACTCGCACGTCGGCCTTCAGGCGCGCCTCATGTCGCAGGCGCTGCGCAAGCTCACCGGCGGTCTCAACCAGACGCA
GACGTCGATGATCTTCATCAACCAGCTGCGCGAGAAGATCGGCGTGTTCTTCGGCAGCCCCGAGACCACCGCCGGCGGTA
AGGCGCTGAAGTTCTACGCCTCGGTCCGCCTCGACATCCGCCGCATCGAGACCCTGAAGGACGGCACCGACGCCGTCGGC
AACCGCACCCGCGTGAAGGTCGTCAAGAACAAGATGGCGCCGCCGTTCAAGCAGGCGGAGTTCGACATCCTCTACGGCAT
CGGCATCTCCCGCGAGGGCAGCCTGATCGACTTCGGCGTCGAGCACGAGATCGTGCGCAAGTCGGGCGCCTGGTACACCT
ACGACGGCGACCAGCTCGGCCAGGGCAAGGAGAACGCGCGGCGGTACCTGCTCGACAACCCGGCGACGGCGCAGGAGATC
GAGAACAAGATCCTCGCGAAGCTGGGCATCGGTGCGGCACCCGCGGCCGCTCCGGCCGCGGTCGAGTCGATCCAGCCGAA
GATCGCCCAGCGCAAGGCCGCGGGCGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

65.782

95.225

0.626
  recA Acinetobacter baumannii D1279779

68.421

90.73

0.621
  recA Acinetobacter baylyi ADP1

68.111

90.73

0.618
  recA Ralstonia pseudosolanacearum GMI1000

66.768

92.135

0.615
  recA Neisseria gonorrhoeae MS11

66.564

91.573

0.61
  recA Neisseria gonorrhoeae MS11

66.564

91.573

0.61
  recA Neisseria gonorrhoeae strain FA1090

66.564

91.573

0.61
  recA Bacillus subtilis subsp. subtilis str. 168

65.951

91.573

0.604
  recA Streptococcus mitis SK321

60.857

98.315

0.598
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.144

89.607

0.593
  recA Vibrio cholerae strain A1552

66.144

89.607

0.593
  recA Latilactobacillus sakei subsp. sakei 23K

63.526

92.416

0.587
  recA Helicobacter pylori strain NCTC11637

63.333

92.697

0.587
  recA Helicobacter pylori 26695

63.333

92.697

0.587
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.497

91.573

0.581
  recA Streptococcus mitis NCTC 12261

62.727

92.697

0.581
  recA Streptococcus pyogenes NZ131

62.805

92.135

0.579
  recA Streptococcus pneumoniae TIGR4

62.121

92.697

0.576
  recA Streptococcus pneumoniae R6

62.121

92.697

0.576
  recA Streptococcus pneumoniae Rx1

62.121

92.697

0.576
  recA Streptococcus pneumoniae D39

62.121

92.697

0.576
  recA Lactococcus lactis subsp. cremoris KW2

61.818

92.697

0.573
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.398

92.416

0.567
  recA Glaesserella parasuis strain SC1401

62.617

90.169

0.565
  recA Streptococcus mutans UA159

61.094

92.416

0.565
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.327

91.854

0.545