Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   OH144_RS20215 Genome accession   NZ_CP111079
Coordinates   4768702..4769751 (-) Length   349 a.a.
NCBI ID   WP_266204060.1    Uniprot ID   -
Organism   Pontibacter kalidii strain XAAS-72     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4763702..4774751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH144_RS20195 - 4764841..4765551 (-) 711 WP_266204056.1 RluA family pseudouridine synthase -
  OH144_RS20200 - 4765770..4766798 (-) 1029 WP_266204057.1 cell wall metabolism sensor histidine kinase WalK -
  OH144_RS20205 - 4766802..4767491 (-) 690 WP_266204058.1 response regulator transcription factor -
  OH144_RS20210 - 4767719..4768531 (-) 813 WP_266204059.1 DUF3108 domain-containing protein -
  OH144_RS20215 recA 4768702..4769751 (-) 1050 WP_266204060.1 recombinase RecA Machinery gene
  OH144_RS20220 - 4769912..4771063 (+) 1152 WP_266204061.1 hypothetical protein -
  OH144_RS20225 - 4771702..4772331 (-) 630 WP_266204062.1 GNAT family N-acetyltransferase -
  OH144_RS20230 - 4772487..4773350 (+) 864 WP_266204063.1 SDR family NAD(P)-dependent oxidoreductase -
  OH144_RS20235 - 4773426..4773854 (-) 429 WP_266204064.1 hypothetical protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37444.02 Da        Isoelectric Point: 5.3326

>NTDB_id=757724 OH144_RS20215 WP_266204060.1 4768702..4769751(-) (recA) [Pontibacter kalidii strain XAAS-72]
MSVSNEKLKALQLTMDKLDKTYGKGTVMKLSDNKVEDIPAISTGSLGLDIALGIGGLPRGRVVEIYGPESSGKTTLTLHC
IAEAQKKGGLAAFIDAEHAFDRIYAQKLGIDTENLLISQPDNGEQALEIADHLIRSGAIDIIVIDSVAALVPKGELEGDM
GDSKMGLQARLMSQALRKLTGTINKTGCTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRVGQIKESADNIT
GNRTRVKVVKNKVAPPFKVVEFDIMYGEGISKVGEVLDLGVELGIVQKSGSWFSYNGDKLGQGRDGVKQILLDNPELMDE
IENKIRAIVKGEPEKVAAALDDAAASSAE

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=757724 OH144_RS20215 WP_266204060.1 4768702..4769751(-) (recA) [Pontibacter kalidii strain XAAS-72]
ATGAGCGTAAGCAACGAAAAACTGAAGGCCCTGCAGCTGACCATGGACAAGCTCGACAAAACATACGGTAAAGGCACCGT
CATGAAGCTGAGCGACAACAAGGTTGAGGACATTCCGGCCATCTCCACTGGTTCGCTGGGTCTGGATATAGCGTTGGGTA
TCGGCGGTTTGCCACGCGGCCGTGTCGTAGAGATCTACGGTCCTGAATCCTCTGGTAAAACCACGCTTACTTTGCACTGT
ATCGCAGAAGCACAGAAAAAAGGCGGCCTGGCAGCATTCATTGACGCTGAGCACGCATTCGACCGAATATACGCCCAGAA
ATTAGGCATCGATACTGAAAACCTTCTGATATCGCAGCCGGATAATGGTGAGCAGGCGCTTGAGATCGCCGACCACCTGA
TCCGCTCCGGCGCTATCGACATTATTGTAATTGACTCCGTGGCTGCCCTCGTGCCGAAAGGCGAGCTGGAAGGCGACATG
GGTGACAGCAAGATGGGCCTGCAGGCGCGTCTGATGTCGCAGGCACTGCGTAAGCTGACCGGTACGATCAACAAAACCGG
CTGTACCTGTATCTTCATCAACCAGCTGCGCGAGAAGATCGGGGTAATGTTCGGTAACCCGGAGACGACCACTGGCGGTA
ACGCCCTGAAGTTCTACGCCTCTGTACGCCTGGATATCCGCCGTGTGGGCCAGATTAAGGAGAGCGCCGATAACATTACC
GGTAACCGCACCCGCGTGAAGGTAGTGAAGAACAAAGTGGCGCCTCCGTTCAAGGTAGTAGAGTTTGACATCATGTATGG
CGAGGGCATTTCTAAAGTAGGCGAAGTGCTCGACCTGGGCGTTGAACTGGGCATCGTGCAGAAATCAGGCTCCTGGTTCT
CCTACAACGGTGACAAGCTGGGCCAGGGCCGTGACGGTGTGAAGCAGATCCTGCTGGACAACCCCGAACTCATGGATGAG
ATCGAGAACAAGATCAGAGCGATCGTGAAAGGCGAGCCGGAAAAAGTAGCCGCCGCACTGGACGATGCCGCTGCATCATC
AGCCGAGTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

72.727

94.556

0.688
  recA Ralstonia pseudosolanacearum GMI1000

68.308

93.123

0.636
  recA Acinetobacter baylyi ADP1

63.529

97.421

0.619
  recA Glaesserella parasuis strain SC1401

64.072

95.702

0.613
  recA Neisseria gonorrhoeae MS11

65.138

93.696

0.61
  recA Neisseria gonorrhoeae strain FA1090

65.138

93.696

0.61
  recA Neisseria gonorrhoeae MS11

65.138

93.696

0.61
  recA Acinetobacter baumannii D1279779

66.25

91.691

0.607
  recA Helicobacter pylori strain NCTC11637

63.914

93.696

0.599
  recA Helicobacter pylori 26695

63.609

93.696

0.596
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64

93.123

0.596
  recA Bacillus subtilis subsp. subtilis str. 168

64.286

92.264

0.593
  recA Pseudomonas stutzeri DSM 10701

64.486

91.977

0.593
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.848

92.55

0.582
  recA Vibrio cholerae strain A1552

62.848

92.55

0.582
  recA Streptococcus mitis NCTC 12261

57.514

99.14

0.57
  recA Streptococcus pyogenes NZ131

60.615

93.123

0.564
  recA Lactococcus lactis subsp. cremoris KW2

60.615

93.123

0.564
  recA Latilactobacillus sakei subsp. sakei 23K

60.372

92.55

0.559
  recA Streptococcus mutans UA159

60

93.123

0.559
  recA Streptococcus mitis SK321

59.259

92.837

0.55
  recA Streptococcus pneumoniae R6

58.769

93.123

0.547
  recA Streptococcus pneumoniae TIGR4

58.769

93.123

0.547
  recA Streptococcus pneumoniae D39

58.769

93.123

0.547
  recA Streptococcus pneumoniae Rx1

58.769

93.123

0.547
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.657

93.696

0.521