Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ONV75_RS06530 Genome accession   NZ_CP111077
Coordinates   1410797..1411876 (+) Length   359 a.a.
NCBI ID   WP_003415121.1    Uniprot ID   A0A2S7F8L0
Organism   Clostridium sp. LQ25     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1405797..1416876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ONV75_RS06515 (ONV75_06515) - 1406050..1408479 (+) 2430 WP_043662184.1 FtsK/SpoIIIE family DNA translocase -
  ONV75_RS06520 (ONV75_06520) rimO 1408717..1410051 (+) 1335 WP_173424480.1 30S ribosomal protein S12 methylthiotransferase RimO -
  ONV75_RS06525 (ONV75_06525) pgsA 1410035..1410625 (+) 591 WP_003428378.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ONV75_RS06530 (ONV75_06530) recA 1410797..1411876 (+) 1080 WP_003415121.1 recombinase RecA Machinery gene
  ONV75_RS06535 (ONV75_06535) rny 1412157..1413698 (+) 1542 WP_223078323.1 ribonuclease Y -
  ONV75_RS06540 (ONV75_06540) - 1413940..1414200 (+) 261 WP_027635076.1 stage V sporulation protein S -
  ONV75_RS06545 (ONV75_06545) - 1414315..1414575 (+) 261 WP_002579660.1 HPr family phosphocarrier protein -
  ONV75_RS06550 (ONV75_06550) - 1414648..1414866 (-) 219 WP_002579661.1 DUF378 domain-containing protein -
  ONV75_RS06555 (ONV75_06555) purB 1415157..1416587 (+) 1431 WP_024038971.1 adenylosuccinate lyase -

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 38475.92 Da        Isoelectric Point: 5.3567

>NTDB_id=757705 ONV75_RS06530 WP_003415121.1 1410797..1411876(+) (recA) [Clostridium sp. LQ25]
MANIDAEKLKAIESAMSNIEKQFGKGSVMKLGDHNVTTMDAISTGCLDLDIALGIGGVPKGRIIEIYGPESSGKTTVALS
IAAEAQKKGGAVGYIDAEHALDPSYAQKIGVDVESLIISQPDTGEQGLEIAEALVRSGAIDVLVVDSVAALVPKAEIEGE
MGDSHIGLQARLMSQALRKLAGTINKTNCVAIFINQLREKVGVMFGSPETTTGGRALKFYASVRLDIRRIDSIKQGDSII
GNRTRVKVMKNKVAPPFRQAEFDIMYNEGISRTGNVLDVGVKEEIVQKSGAWFSYGDVRLGQGRENSKVYLKDNPDVALD
IENQIRAKYNLPLAEAAPAEAKSESAVDTAPKEDKTKEK

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=757705 ONV75_RS06530 WP_003415121.1 1410797..1411876(+) (recA) [Clostridium sp. LQ25]
ATGGCAAATATAGATGCAGAAAAGCTAAAAGCAATTGAAAGTGCTATGAGTAATATAGAAAAGCAGTTTGGTAAAGGGTC
AGTCATGAAATTGGGAGATCATAATGTGACGACTATGGATGCTATATCAACTGGATGCTTGGATTTAGATATAGCTCTTG
GAATAGGTGGAGTTCCAAAGGGAAGAATAATTGAAATTTATGGACCTGAAAGTTCGGGTAAAACAACAGTAGCCCTTAGT
ATAGCAGCAGAAGCACAAAAAAAAGGTGGAGCTGTTGGATATATTGATGCAGAGCATGCATTAGATCCTAGTTATGCACA
AAAGATAGGTGTAGATGTTGAAAGCTTAATAATTTCTCAGCCAGATACAGGAGAACAAGGCCTTGAAATAGCAGAAGCAT
TAGTACGTTCTGGAGCTATTGATGTATTAGTTGTTGACTCTGTTGCAGCTTTAGTTCCAAAAGCTGAAATAGAAGGGGAA
ATGGGAGATTCTCATATAGGTCTTCAAGCGAGATTAATGTCTCAAGCATTAAGAAAGCTTGCAGGTACAATAAATAAAAC
TAATTGTGTTGCGATATTTATAAACCAATTAAGAGAAAAAGTTGGAGTAATGTTCGGTTCACCTGAAACAACAACTGGTG
GTAGAGCGTTAAAATTCTATGCATCAGTAAGACTTGATATACGTAGAATAGATTCGATAAAACAAGGTGATTCAATAATA
GGTAACAGAACTAGAGTTAAAGTAATGAAGAATAAGGTTGCACCTCCATTTAGACAGGCAGAATTTGATATTATGTATAA
TGAAGGAATATCAAGAACTGGTAATGTTCTTGATGTAGGAGTTAAAGAAGAAATAGTTCAAAAGAGCGGAGCTTGGTTCT
CATATGGTGATGTACGATTAGGCCAAGGTAGAGAAAATTCAAAAGTATATTTAAAAGATAATCCAGATGTAGCTCTTGAT
ATAGAAAATCAAATTAGAGCTAAATATAATTTACCATTAGCTGAAGCAGCACCAGCTGAAGCTAAAAGTGAAAGCGCAGT
AGATACTGCTCCTAAAGAAGATAAGACTAAAGAAAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(10-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S7F8L0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

63.953

95.822

0.613
  recA Bacillus subtilis subsp. subtilis str. 168

67.178

90.808

0.61
  recA Streptococcus mitis SK321

60.34

98.329

0.593
  recA Acinetobacter baylyi ADP1

61.739

96.1

0.593
  recA Pseudomonas stutzeri DSM 10701

64.923

90.529

0.588
  recA Streptococcus mitis NCTC 12261

59.773

98.329

0.588
  recA Helicobacter pylori strain NCTC11637

65.123

90.251

0.588
  recA Helicobacter pylori 26695

65.123

90.251

0.588
  recA Glaesserella parasuis strain SC1401

59.829

97.772

0.585
  recA Streptococcus mutans UA159

59.04

98.607

0.582
  recA Latilactobacillus sakei subsp. sakei 23K

64.308

90.529

0.582
  recA Neisseria gonorrhoeae MS11

64.907

89.694

0.582
  recA Neisseria gonorrhoeae strain FA1090

64.907

89.694

0.582
  recA Neisseria gonorrhoeae MS11

64.907

89.694

0.582
  recA Streptococcus pneumoniae D39

58.38

99.721

0.582
  recA Streptococcus pneumoniae R6

58.38

99.721

0.582
  recA Streptococcus pneumoniae TIGR4

58.38

99.721

0.582
  recA Streptococcus pneumoniae Rx1

58.38

99.721

0.582
  recA Acinetobacter baumannii D1279779

64.396

89.972

0.579
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.805

91.365

0.574
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.58

90.251

0.574
  recA Streptococcus pyogenes NZ131

62.691

91.086

0.571
  recA Lactococcus lactis subsp. cremoris KW2

62.121

91.922

0.571
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.3

89.972

0.552
  recA Vibrio cholerae strain A1552

61.3

89.972

0.552
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.075

89.694

0.521