Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PHLH3_RS22930 Genome accession   NZ_AP021905
Coordinates   5015192..5016241 (-) Length   349 a.a.
NCBI ID   WP_111261759.1    Uniprot ID   -
Organism   Pseudomonas sp. Pc102     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5010192..5021241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PHLH3_RS22910 (PHLH8_45520) - 5012603..5013019 (+) 417 WP_173171775.1 quorum-sensing-regulated virulence factor family protein -
  PHLH3_RS22915 (PHLH8_45530) - 5013029..5013223 (-) 195 WP_111261756.1 hypothetical protein -
  PHLH3_RS22920 (PHLH8_45540) - 5013588..5014667 (+) 1080 WP_213625896.1 TIGR00730 family Rossman fold protein -
  PHLH3_RS22925 (PHLH8_45550) recX 5014719..5015186 (-) 468 WP_173171771.1 recombination regulator RecX -
  PHLH3_RS22930 (PHLH8_45560) recA 5015192..5016241 (-) 1050 WP_111261759.1 recombinase RecA Machinery gene
  PHLH3_RS22935 (PHLH8_45570) - 5016327..5016839 (-) 513 WP_213625897.1 CinA family protein -
  PHLH3_RS22940 (PHLH8_45580) mutS 5016969..5019548 (+) 2580 WP_213625898.1 DNA mismatch repair protein MutS -
  PHLH3_RS22945 (PHLH8_45590) fdxA 5019687..5020010 (+) 324 WP_111261643.1 ferredoxin FdxA -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37345.70 Da        Isoelectric Point: 5.3304

>NTDB_id=75759 PHLH3_RS22930 WP_111261759.1 5015192..5016241(-) (recA) [Pseudomonas sp. Pc102]
MDENKKRALAAALGQIEKQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTMTLSVIA
EAQKAGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
SHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEGEEVVGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYRNGEIIDLGVQQGILEKSGAWYSYQGNKIGQGKANSAKYLEDNPEVGKAIEK
LIREQLLNRDAIKGESAATSEVAETEADF

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=75759 PHLH3_RS22930 WP_111261759.1 5015192..5016241(-) (recA) [Pseudomonas sp. Pc102]
ATGGACGAGAACAAGAAGCGTGCTTTGGCGGCTGCCCTGGGCCAGATCGAGAAACAGTTCGGCAAGGGCGCCGTAATGCG
CATGGGCGATCACGATCGCCAGGCCATTCCGGCCATCTCCACCGGCTCCCTCGGCCTGGATATCGCGCTCGGCATCGGTG
GCCTGCCCAAGGGCCGTATCGTGGAAATATACGGTCCGGAATCCTCGGGCAAGACCACCATGACCCTGTCCGTGATCGCT
GAAGCCCAGAAGGCGGGTGCCACTTGCGCATTCGTCGACGCCGAGCACGCGCTGGACCCCGACTACGCCGGCAAACTGGG
CGTGAATGTCGATGACCTGCTGGTTTCCCAGCCGGATACCGGCGAGCAGGCGCTGGAAATCACCGACATGCTGGTGCGTT
CCAATGCAGTCGACGTGATCATCGTCGACTCCGTGGCCGCCCTGGTGCCCAAGGCCGAGATCGAAGGCGAGATGGGGGAT
TCCCACGTCGGCCTGCAGGCCCGCCTGATGTCCCAGGCGCTGCGCAAGATCACCGGCAACATCAAGAACGCCAACTGCCT
GGTCATCTTCATCAACCAAATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCCTCCGTCCGCCTCGACATCCGCCGTATCGGCGCGGTGAAAGAGGGCGAGGAAGTGGTGGGCAGCGAA
ACCCGCGTCAAGGTCGTGAAGAACAAGGTCGCTCCGCCCTTCCGTCAGGCCGAGTTCCAGATTCTTTATGGCAAGGGCAT
CTACCGCAACGGCGAGATCATCGACCTCGGCGTGCAGCAGGGCATCCTGGAGAAGTCTGGTGCCTGGTACAGCTACCAGG
GCAACAAGATCGGCCAGGGCAAGGCCAATTCCGCCAAGTACCTGGAAGACAACCCTGAAGTAGGCAAGGCCATCGAGAAG
CTGATCCGCGAGCAGTTGCTCAATCGTGATGCCATCAAGGGCGAATCCGCTGCCACCAGCGAAGTCGCCGAAACCGAAGC
CGACTTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

88.793

99.713

0.885
  recA Acinetobacter baylyi ADP1

75.072

100

0.751
  recA Acinetobacter baumannii D1279779

77.982

93.696

0.731
  recA Vibrio cholerae strain A1552

75.305

93.983

0.708
  recA Vibrio cholerae O1 biovar El Tor strain E7946

75.305

93.983

0.708
  recA Neisseria gonorrhoeae MS11

67.908

100

0.679
  recA Neisseria gonorrhoeae MS11

67.908

100

0.679
  recA Neisseria gonorrhoeae strain FA1090

67.908

100

0.679
  recA Glaesserella parasuis strain SC1401

72.84

92.837

0.676
  recA Ralstonia pseudosolanacearum GMI1000

73.955

89.112

0.659
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.138

93.696

0.61
  recA Helicobacter pylori strain NCTC11637

63.609

93.696

0.596
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.275

95.702

0.596
  recA Helicobacter pylori 26695

62.997

93.696

0.59
  recA Streptococcus mitis SK321

57.714

100

0.579
  recA Bacillus subtilis subsp. subtilis str. 168

62.422

92.264

0.576
  recA Streptococcus mitis NCTC 12261

57.184

99.713

0.57
  recA Streptococcus mutans UA159

56.534

100

0.57
  recA Latilactobacillus sakei subsp. sakei 23K

60.125

91.977

0.553
  recA Streptococcus pneumoniae D39

58.589

93.41

0.547
  recA Streptococcus pneumoniae Rx1

58.589

93.41

0.547
  recA Streptococcus pneumoniae R6

58.589

93.41

0.547
  recA Streptococcus pneumoniae TIGR4

58.589

93.41

0.547
  recA Streptococcus pyogenes NZ131

58.462

93.123

0.544
  recA Lactococcus lactis subsp. cremoris KW2

57.585

92.55

0.533
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.748

93.41

0.53

Multiple sequence alignment