Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | KI243_RS06935 | Genome accession | NZ_AP021904 |
| Coordinates | 1593467..1594528 (+) | Length | 353 a.a. |
| NCBI ID | WP_017127646.1 | Uniprot ID | A0A7Y8CJJ0 |
| Organism | Pseudomonas sp. Ost2 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1575230..1599783 | 1593467..1594528 | within | 0 |
Gene organization within MGE regions
Location: 1575230..1599783
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KI243_RS06830 (PHLH7_13380) | - | 1576569..1576916 (+) | 348 | WP_177109005.1 | phage holin family protein | - |
| KI243_RS06835 (PHLH7_13390) | - | 1577079..1577663 (+) | 585 | WP_017127626.1 | hypothetical protein | - |
| KI243_RS06840 (PHLH7_13400) | - | 1577660..1577842 (+) | 183 | WP_017127627.1 | DUF2635 domain-containing protein | - |
| KI243_RS06845 (PHLH7_13410) | - | 1577842..1579338 (+) | 1497 | WP_212810640.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| KI243_RS06850 (PHLH7_13420) | - | 1579373..1579954 (+) | 582 | WP_017127629.1 | DUF642 domain-containing protein | - |
| KI243_RS06855 (PHLH7_13430) | - | 1580040..1580387 (+) | 348 | WP_017127630.1 | phage tail tube protein | - |
| KI243_RS06860 (PHLH7_13440) | - | 1580384..1580680 (+) | 297 | WP_017127631.1 | phage tail assembly protein | - |
| KI243_RS06865 (PHLH7_13450) | - | 1580811..1582406 (+) | 1596 | WP_244861820.1 | hypothetical protein | - |
| KI243_RS06870 (PHLH7_13460) | - | 1582387..1583673 (+) | 1287 | WP_103032827.1 | DNA circularization N-terminal domain-containing protein | - |
| KI243_RS06875 (PHLH7_13470) | - | 1583677..1584714 (+) | 1038 | WP_017127633.1 | phage baseplate assembly protein | - |
| KI243_RS06880 (PHLH7_13480) | - | 1584878..1585387 (+) | 510 | WP_017127634.1 | phage baseplate assembly protein | - |
| KI243_RS06885 (PHLH7_13490) | - | 1585387..1585785 (+) | 399 | WP_177085813.1 | phage GP46 family protein | - |
| KI243_RS06890 (PHLH7_13500) | - | 1585775..1586815 (+) | 1041 | WP_017127636.1 | baseplate J/gp47 family protein | - |
| KI243_RS06895 (PHLH7_13510) | - | 1586803..1587402 (+) | 600 | WP_177066480.1 | putative phage tail protein | - |
| KI243_RS06900 (PHLH7_13520) | - | 1587414..1588979 (+) | 1566 | WP_178990875.1 | phage tail protein | - |
| KI243_RS06905 | - | 1588976..1589323 (+) | 348 | WP_178990877.1 | tail fiber assembly protein | - |
| KI243_RS06910 (PHLH7_13530) | - | 1589653..1590831 (+) | 1179 | WP_244861821.1 | phage tail protein | - |
| KI243_RS06915 (PHLH7_13540) | - | 1590846..1591271 (+) | 426 | WP_244861822.1 | phage tail assembly chaperone | - |
| KI243_RS06920 (PHLH7_13550) | - | 1591359..1591922 (+) | 564 | WP_212810641.1 | glycoside hydrolase family 19 protein | - |
| KI243_RS06925 (PHLH7_13560) | - | 1591904..1592440 (+) | 537 | WP_017127644.1 | lysis system i-spanin subunit Rz | - |
| KI243_RS06930 (PHLH7_13570) | - | 1592883..1593383 (+) | 501 | WP_212810642.1 | CinA family protein | - |
| KI243_RS06935 (PHLH7_13580) | recA | 1593467..1594528 (+) | 1062 | WP_017127646.1 | recombinase RecA | Machinery gene |
| KI243_RS06940 (PHLH7_13590) | recX | 1594537..1595004 (+) | 468 | WP_017127647.1 | recombination regulator RecX | - |
| KI243_RS06945 (PHLH7_13600) | - | 1595005..1596123 (-) | 1119 | WP_017127648.1 | LOG family protein | - |
| KI243_RS06950 (PHLH7_13610) | - | 1596446..1596640 (+) | 195 | WP_017127649.1 | hypothetical protein | - |
| KI243_RS06955 (PHLH7_13620) | - | 1596641..1597066 (-) | 426 | WP_017127650.1 | PA3611 family quorum-sensing-regulated virulence factor | - |
| KI243_RS06960 (PHLH7_13630) | - | 1597296..1598015 (+) | 720 | WP_212810643.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| KI243_RS06965 (PHLH7_13640) | - | 1597990..1598892 (-) | 903 | WP_212810644.1 | DMT family transporter | - |
| KI243_RS06970 (PHLH7_13650) | erdR | 1599133..1599783 (+) | 651 | WP_017127653.1 | response regulator transcription factor ErdR | - |
Sequence
Protein
Download Length: 353 a.a. Molecular weight: 37489.89 Da Isoelectric Point: 5.2887
>NTDB_id=75707 KI243_RS06935 WP_017127646.1 1593467..1594528(+) (recA) [Pseudomonas sp. Ost2]
MDDNKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPSISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYSYNGSKIGQGKANSAKFLADNPEIAATLEK
QLRDKLLTPGVDTKANSGAAVVETEDDLADADL
MDDNKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPSISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYSYNGSKIGQGKANSAKFLADNPEIAATLEK
QLRDKLLTPGVDTKANSGAAVVETEDDLADADL
Nucleotide
Download Length: 1062 bp
>NTDB_id=75707 KI243_RS06935 WP_017127646.1 1593467..1594528(+) (recA) [Pseudomonas sp. Ost2]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCTTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTGATGCG
TATGGGCGATCATGACCGTCAGGCGATCCCTTCGATCTCCACCGGTTCCCTGGGCCTGGACATCGCCCTCGGCATCGGCG
GCCTGCCAAAGGGCCGTATCGTGGAAATCTACGGTCCGGAATCCTCGGGTAAGACCACCCTGACGCTTTCCGTCATCGCC
CAGGCGCAGAAAGCCGGTGCGACCTGTGCCTTCGTCGACGCCGAACACGCCCTGGACCCGGAATACGCCGGCAAGCTGGG
CGTCAATGTCGACGATCTGCTGGTTTCCCAGCCGGACACCGGCGAGCAGGCCCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCGGTTGACGTGATCATCGTCGACTCCGTGGCCGCCCTGGTGCCAAAAGCGGAAATCGAAGGTGAAATGGGCGAC
ATGCACGTCGGCCTGCAAGCCCGCCTGATGTCCCAGGCACTGCGCAAGATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCTTCGGTTCGCCTGGACATCCGTCGTACCGGCGCGGTGAAGGAAGGCGACGAAGTGGTGGGCAGCGAA
ACCCGCGTCAAGGTCGTCAAGAACAAGGTGGCTTCGCCGTTCCGTCAGGCCGAGTTCCAGATCCTTTACGGCAAGGGCAT
CTACCTCAATGGCGAGATGATCGACCTGGGCGTGCTGCACGGCTTTGTCGAGAAGTCCGGTGCCTGGTACAGCTACAACG
GCAGCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCGGACAACCCGGAAATCGCCGCTACCCTCGAGAAG
CAACTGCGTGACAAGTTGCTGACTCCAGGTGTTGATACCAAGGCCAACTCCGGTGCTGCTGTCGTCGAAACCGAAGACGA
CCTGGCCGACGCTGACCTCTGA
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCTTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTGATGCG
TATGGGCGATCATGACCGTCAGGCGATCCCTTCGATCTCCACCGGTTCCCTGGGCCTGGACATCGCCCTCGGCATCGGCG
GCCTGCCAAAGGGCCGTATCGTGGAAATCTACGGTCCGGAATCCTCGGGTAAGACCACCCTGACGCTTTCCGTCATCGCC
CAGGCGCAGAAAGCCGGTGCGACCTGTGCCTTCGTCGACGCCGAACACGCCCTGGACCCGGAATACGCCGGCAAGCTGGG
CGTCAATGTCGACGATCTGCTGGTTTCCCAGCCGGACACCGGCGAGCAGGCCCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCGGTTGACGTGATCATCGTCGACTCCGTGGCCGCCCTGGTGCCAAAAGCGGAAATCGAAGGTGAAATGGGCGAC
ATGCACGTCGGCCTGCAAGCCCGCCTGATGTCCCAGGCACTGCGCAAGATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCTTCGGTTCGCCTGGACATCCGTCGTACCGGCGCGGTGAAGGAAGGCGACGAAGTGGTGGGCAGCGAA
ACCCGCGTCAAGGTCGTCAAGAACAAGGTGGCTTCGCCGTTCCGTCAGGCCGAGTTCCAGATCCTTTACGGCAAGGGCAT
CTACCTCAATGGCGAGATGATCGACCTGGGCGTGCTGCACGGCTTTGTCGAGAAGTCCGGTGCCTGGTACAGCTACAACG
GCAGCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCGGACAACCCGGAAATCGCCGCTACCCTCGAGAAG
CAACTGCGTGACAAGTTGCTGACTCCAGGTGTTGATACCAAGGCCAACTCCGGTGCTGCTGTCGTCGAAACCGAAGACGA
CCTGGCCGACGCTGACCTCTGA
Similar proteins
Only experimentally validated proteins are listed.