Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   OOT43_RS10145 Genome accession   NZ_CP110921
Coordinates   2166134..2167177 (-) Length   347 a.a.
NCBI ID   WP_266024818.1    Uniprot ID   -
Organism   Methylococcus mesophilus strain 16-5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2161134..2172177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OOT43_RS10125 (OOT43_10125) csrA 2161436..2161630 (-) 195 WP_218805609.1 carbon storage regulator CsrA -
  OOT43_RS10130 (OOT43_10130) - 2161780..2163009 (-) 1230 WP_266024816.1 aspartate kinase -
  OOT43_RS10135 (OOT43_10135) alaS 2163044..2165647 (-) 2604 WP_266024817.1 alanine--tRNA ligase -
  OOT43_RS10140 (OOT43_10140) - 2165667..2166137 (-) 471 WP_317134073.1 regulatory protein RecX -
  OOT43_RS10145 (OOT43_10145) recA 2166134..2167177 (-) 1044 WP_266024818.1 recombinase RecA Machinery gene
  OOT43_RS10150 (OOT43_10150) thpR 2167210..2167785 (-) 576 WP_266024819.1 RNA 2',3'-cyclic phosphodiesterase -
  OOT43_RS10155 (OOT43_10155) - 2167763..2168245 (-) 483 WP_266024884.1 CinA family protein -
  OOT43_RS10160 (OOT43_10160) - 2168920..2170056 (-) 1137 WP_266024820.1 peptidoglycan DD-metalloendopeptidase family protein -
  OOT43_RS10165 (OOT43_10165) - 2170445..2171149 (-) 705 WP_266024822.1 hypothetical protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37068.29 Da        Isoelectric Point: 5.3209

>NTDB_id=756938 OOT43_RS10145 WP_266024818.1 2166134..2167177(-) (recA) [Methylococcus mesophilus strain 16-5]
MDENKRKALGAALSQIEKQFGKGSVMRMGDVAAVRDIDVVSTGSLALDIALGCGGLPRGRIVEIYGPESSGKTTLTLEVI
AQAQKTGGVAAFVDAEHALDPVYAEKIGVNLDDLLVSQPDTGEQALEIADMLVRSGGVDVVVIDSVAALTPKAELEGEMG
DSHMGLQARLMSQALRKLTANIKRSNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRSGAIKNGDEVIGN
ETRVKVVKNKVAPPFRVADFEILYGEGVSREGELIDLGVNHDIVQKSGSWYSYGGDRIGQGKDNVRIYLKEHPETAAAIE
AAVREKALAGLKHAAPPERAAAEESEF

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=756938 OOT43_RS10145 WP_266024818.1 2166134..2167177(-) (recA) [Methylococcus mesophilus strain 16-5]
ATGGACGAGAACAAACGCAAGGCCTTGGGTGCCGCTCTTTCCCAGATCGAGAAGCAGTTCGGCAAGGGATCGGTGATGCG
CATGGGCGACGTCGCGGCGGTCCGGGACATCGATGTGGTGTCAACCGGCTCGCTGGCGCTGGACATCGCGCTGGGCTGCG
GCGGTTTGCCGCGCGGCCGCATCGTCGAGATTTACGGCCCGGAATCCTCGGGCAAGACCACGCTGACCCTGGAGGTCATC
GCCCAGGCGCAGAAGACCGGCGGCGTGGCGGCGTTCGTGGACGCCGAGCACGCGCTGGACCCGGTCTACGCCGAAAAGAT
CGGGGTGAACCTCGACGACCTGCTGGTCTCCCAGCCCGACACCGGCGAGCAGGCGCTGGAGATCGCCGATATGCTGGTGC
GTTCCGGCGGCGTGGACGTGGTGGTGATCGACTCGGTGGCGGCGCTGACGCCCAAGGCCGAACTCGAAGGCGAGATGGGC
GATTCCCACATGGGCCTGCAGGCCCGGCTGATGTCGCAGGCTTTGCGCAAGCTGACCGCCAACATCAAGCGCTCCAACAC
CTTGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAATCCGGAGACCACCACCGGAGGCAATG
CGCTCAAGTTCTACGCCTCGGTGCGGCTGGACATCCGCCGTTCCGGCGCGATCAAGAACGGCGACGAGGTGATCGGGAAC
GAGACCCGCGTCAAGGTGGTCAAGAACAAGGTGGCTCCGCCGTTCCGCGTCGCCGATTTTGAAATTCTGTACGGCGAGGG
CGTCTCGCGCGAGGGCGAACTGATCGACCTCGGTGTGAATCACGACATCGTGCAGAAGTCCGGCTCGTGGTACAGCTACG
GCGGCGACCGCATCGGCCAGGGCAAGGACAACGTCCGGATCTATCTCAAGGAGCATCCCGAAACCGCCGCCGCCATCGAG
GCTGCAGTTCGTGAAAAGGCGCTGGCGGGGCTGAAGCATGCGGCGCCTCCGGAGCGCGCCGCGGCGGAAGAGAGTGAGTT
CTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

72.254

99.712

0.72
  recA Pseudomonas stutzeri DSM 10701

75

94.524

0.709
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.695

94.524

0.706
  recA Vibrio cholerae strain A1552

74.695

94.524

0.706
  recA Acinetobacter baumannii D1279779

73.252

94.813

0.695
  recA Neisseria gonorrhoeae strain FA1090

72.59

95.677

0.695
  recA Neisseria gonorrhoeae MS11

72.59

95.677

0.695
  recA Neisseria gonorrhoeae MS11

72.59

95.677

0.695
  recA Ralstonia pseudosolanacearum GMI1000

76.774

89.337

0.686
  recA Glaesserella parasuis strain SC1401

72.05

92.795

0.669
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.766

95.965

0.631
  recA Bacillus subtilis subsp. subtilis str. 168

66.46

92.795

0.617
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.846

93.66

0.617
  recA Latilactobacillus sakei subsp. sakei 23K

62.5

96.83

0.605
  recA Helicobacter pylori strain NCTC11637

63.19

93.948

0.594
  recA Streptococcus pyogenes NZ131

62.5

94.524

0.591
  recA Helicobacter pylori 26695

62.883

93.948

0.591
  recA Streptococcus pneumoniae D39

62.577

93.948

0.588
  recA Streptococcus pneumoniae R6

62.577

93.948

0.588
  recA Streptococcus pneumoniae TIGR4

62.577

93.948

0.588
  recA Streptococcus pneumoniae Rx1

62.577

93.948

0.588
  recA Streptococcus mitis SK321

62.346

93.372

0.582
  recA Streptococcus mitis NCTC 12261

62.037

93.372

0.579
  recA Streptococcus mutans UA159

61.656

93.948

0.579
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.423

95.389

0.576
  recA Lactococcus lactis subsp. cremoris KW2

60.802

93.372

0.568