Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   OEI98_RS06905 Genome accession   NZ_CP110888
Coordinates   1335110..1336135 (-) Length   341 a.a.
NCBI ID   WP_003869117.1    Uniprot ID   M8DUG5
Organism   Thermoanaerobacter sp. RKWS2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1330110..1341135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OEI98_RS06880 (OEI98_001376) - 1330714..1331550 (-) 837 WP_266040404.1 PHP domain-containing protein -
  OEI98_RS06885 (OEI98_001377) - 1331620..1331880 (-) 261 WP_003866776.1 stage V sporulation protein S -
  OEI98_RS06890 (OEI98_001378) - 1331953..1332732 (-) 780 WP_004396228.1 TIGR00282 family metallophosphoesterase -
  OEI98_RS06895 (OEI98_001379) rny 1332859..1334385 (-) 1527 WP_266040409.1 ribonuclease Y -
  OEI98_RS06900 (OEI98_001380) - 1334465..1335066 (-) 602 Protein_1312 regulatory protein RecX -
  OEI98_RS06905 (OEI98_001381) recA 1335110..1336135 (-) 1026 WP_003869117.1 recombinase RecA Machinery gene
  OEI98_RS06910 (OEI98_001382) - 1336200..1337441 (-) 1242 WP_003869118.1 competence/damage-inducible protein A -
  OEI98_RS06915 (OEI98_001383) pgsA 1337455..1337991 (-) 537 WP_004396226.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  OEI98_RS06920 (OEI98_001384) rimO 1337991..1339301 (-) 1311 WP_003869120.1 30S ribosomal protein S12 methylthiotransferase RimO -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37028.67 Da        Isoelectric Point: 5.9031

>NTDB_id=756838 OEI98_RS06905 WP_003869117.1 1335110..1336135(-) (recA) [Thermoanaerobacter sp. RKWS2]
MIEKQKALEMAISQIERQFGKGSIMRLGDTAKLNVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAE
AQKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIDGEMGDS
HVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNPETTPGGRALKFYATIRLDVRKVDAIKQGNEIIGNRT
RVKVVKNKIAPPFKQAEFDIMYGEGISREGSILDIGTSIDIIEKSGAWYSYGDIRLGQGRENAKQFLKENKEIADEIERK
IRENFNLAYNKIKSSPDAIVE

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=756838 OEI98_RS06905 WP_003869117.1 1335110..1336135(-) (recA) [Thermoanaerobacter sp. RKWS2]
ATGATAGAAAAACAAAAGGCTTTAGAAATGGCTATAAGTCAGATAGAGAGGCAGTTTGGCAAGGGCTCTATCATGAGATT
GGGAGATACTGCAAAATTGAATGTAGAAGTAATACCTACAGGTTCTCTTGAATTAGACATTGCTTTAGGTGTCGGAGGAG
TTCCAAGGGGAAGGATAATAGAAATTTTTGGCCCTGAGTCTTCAGGAAAAACTACCTTAGCGCTACATATGATAGCAGAA
GCACAAAAAATGGGAGGAACGGGTGCTTTTATAGATGCAGAACATGCTCTTGATCCTGTATATGCAAAAAATCTTGGGGT
CAATATTGAGGATTTATTGGTGGCGCAGCCTGATACGGGCGAACAAGCCTTAGAAATTGCAGAAGCCCTTGTTAGAAGTG
GTGCTGTTGACATAATTGTGATAGACTCTGTTGCTGCTTTAGTACCTAAGGCGGAGATTGATGGTGAAATGGGAGATAGC
CATGTAGGGCTTCAAGCGAGACTGATGTCTCAAGCTTTGAGAAAATTAGCAGGGGTTACTAGTAAGTCTAAAACTATTGT
GGTCTTTATAAACCAGCTTAGAGAGAAAGTAGGTGTTATGTTTGGAAATCCTGAAACAACCCCTGGAGGAAGAGCACTGA
AATTTTATGCCACAATAAGACTAGATGTGAGAAAAGTAGATGCAATAAAGCAGGGAAATGAGATAATCGGCAATAGAACG
CGTGTCAAAGTTGTAAAAAATAAAATTGCTCCGCCTTTTAAACAAGCAGAATTCGATATAATGTATGGAGAAGGTATTTC
AAGAGAAGGAAGCATTTTGGATATTGGCACAAGTATAGACATAATTGAAAAAAGTGGTGCTTGGTATTCCTATGGAGATA
TACGATTAGGGCAAGGAAGAGAAAACGCTAAGCAATTTTTAAAAGAAAACAAAGAAATCGCAGATGAAATTGAAAGAAAA
ATTAGAGAAAATTTCAATCTAGCTTATAATAAAATAAAATCCTCCCCTGATGCAATAGTAGAATGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB M8DUG5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

71.687

97.361

0.698
  recA Vibrio cholerae strain A1552

68.125

93.842

0.639
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.125

93.842

0.639
  recA Latilactobacillus sakei subsp. sakei 23K

66.871

95.601

0.639
  recA Helicobacter pylori strain NCTC11637

63.824

99.707

0.636
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.769

95.308

0.636
  recA Streptococcus pneumoniae D39

65.957

96.481

0.636
  recA Streptococcus mitis NCTC 12261

65.957

96.481

0.636
  recA Streptococcus pneumoniae Rx1

65.957

96.481

0.636
  recA Streptococcus pneumoniae R6

65.957

96.481

0.636
  recA Streptococcus pneumoniae TIGR4

65.957

96.481

0.636
  recA Neisseria gonorrhoeae MS11

67.29

94.135

0.633
  recA Neisseria gonorrhoeae MS11

67.29

94.135

0.633
  recA Neisseria gonorrhoeae strain FA1090

67.29

94.135

0.633
  recA Helicobacter pylori 26695

63.529

99.707

0.633
  recA Streptococcus mitis SK321

65.35

96.481

0.631
  recA Glaesserella parasuis strain SC1401

63.127

99.413

0.628
  recA Streptococcus pyogenes NZ131

65.443

95.894

0.628
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.848

96.774

0.628
  recA Lactococcus lactis subsp. cremoris KW2

64.438

96.481

0.622
  recA Pseudomonas stutzeri DSM 10701

62.985

98.24

0.619
  recA Ralstonia pseudosolanacearum GMI1000

67.093

91.789

0.616
  recA Streptococcus mutans UA159

63.83

96.481

0.616
  recA Acinetobacter baumannii D1279779

64.286

94.428

0.607
  recA Acinetobacter baylyi ADP1

60.35

100

0.607
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.875

93.842

0.581